Experiment: KB with Ampicillin 15.6 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1139 and Psyr_1140 are separated by 606 nucleotides Psyr_1140 and Psyr_1141 are separated by 463 nucleotides
Psyr_1139: Psyr_1139 - Response regulator receiver:CheW-like protein, at 1,289,881 to 1,290,777
_1139
Psyr_1140: Psyr_1140 - Disulfide bond formation protein DsbB, at 1,291,384 to 1,291,893
_1140
Psyr_1141: Psyr_1141 - cytochrome bo3 quinol oxidase subunit 2, at 1,292,357 to 1,293,298
_1141
Position (kb) 1291
1292 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1290.613 kb on + strand, within Psyr_1139 at 1290.613 kb on + strand, within Psyr_1139 at 1290.613 kb on + strand, within Psyr_1139 at 1290.614 kb on - strand, within Psyr_1139 at 1290.624 kb on + strand, within Psyr_1139 at 1290.777 kb on + strand at 1290.777 kb on + strand at 1290.777 kb on + strand at 1290.777 kb on + strand at 1290.777 kb on + strand at 1290.777 kb on + strand at 1290.777 kb on + strand at 1290.777 kb on + strand at 1290.777 kb on + strand at 1290.777 kb on + strand at 1290.777 kb on + strand at 1290.777 kb on + strand at 1290.777 kb on + strand at 1290.777 kb on + strand at 1290.777 kb on + strand at 1290.777 kb on + strand at 1290.777 kb on + strand at 1290.777 kb on + strand at 1290.777 kb on + strand at 1290.777 kb on + strand at 1290.778 kb on - strand at 1290.778 kb on - strand at 1290.778 kb on - strand at 1290.778 kb on - strand at 1290.778 kb on - strand at 1290.778 kb on - strand at 1290.778 kb on - strand at 1290.778 kb on - strand at 1290.778 kb on - strand at 1290.778 kb on - strand at 1290.778 kb on - strand at 1290.778 kb on - strand at 1290.778 kb on - strand at 1290.778 kb on - strand at 1290.778 kb on - strand at 1290.778 kb on - strand at 1290.778 kb on - strand at 1290.778 kb on - strand at 1290.778 kb on - strand at 1290.778 kb on - strand at 1290.778 kb on - strand at 1290.794 kb on + strand at 1290.794 kb on + strand at 1290.795 kb on - strand at 1290.795 kb on - strand at 1290.795 kb on - strand at 1290.795 kb on - strand at 1290.798 kb on + strand at 1290.798 kb on + strand at 1290.798 kb on + strand at 1290.799 kb on - strand at 1290.799 kb on - strand at 1290.799 kb on - strand at 1290.831 kb on + strand at 1290.832 kb on - strand at 1291.062 kb on + strand at 1291.062 kb on + strand at 1291.062 kb on + strand at 1291.063 kb on - strand at 1291.063 kb on - strand at 1291.105 kb on + strand at 1291.105 kb on + strand at 1291.106 kb on - strand at 1291.106 kb on - strand at 1291.106 kb on - strand at 1291.106 kb on - strand at 1291.107 kb on + strand at 1291.107 kb on + strand at 1291.107 kb on + strand at 1291.107 kb on + strand at 1291.107 kb on + strand at 1291.108 kb on - strand at 1291.108 kb on - strand at 1291.108 kb on - strand at 1291.108 kb on - strand at 1291.109 kb on + strand at 1291.109 kb on + strand at 1291.109 kb on + strand at 1291.109 kb on + strand at 1291.109 kb on + strand at 1291.109 kb on + strand at 1291.109 kb on + strand at 1291.109 kb on + strand at 1291.109 kb on + strand at 1291.109 kb on + strand at 1291.109 kb on + strand at 1291.109 kb on + strand at 1291.109 kb on + strand at 1291.109 kb on + strand at 1291.109 kb on + strand at 1291.109 kb on + strand at 1291.109 kb on + strand at 1291.110 kb on - strand at 1291.110 kb on - strand at 1291.110 kb on - strand at 1291.110 kb on - strand at 1291.110 kb on - strand at 1291.110 kb on - strand at 1291.110 kb on - strand at 1291.110 kb on - strand at 1291.110 kb on - strand at 1291.110 kb on - strand at 1291.110 kb on - strand at 1291.110 kb on - strand at 1291.110 kb on - strand at 1291.111 kb on + strand at 1291.111 kb on + strand at 1291.111 kb on + strand at 1291.111 kb on + strand at 1291.111 kb on + strand at 1291.111 kb on + strand at 1291.111 kb on + strand at 1291.112 kb on - strand at 1291.112 kb on - strand at 1291.112 kb on - strand at 1291.112 kb on - strand at 1291.146 kb on + strand at 1291.146 kb on + strand at 1291.146 kb on + strand at 1291.146 kb on + strand at 1291.146 kb on + strand at 1291.146 kb on + strand at 1291.146 kb on + strand at 1291.146 kb on + strand at 1291.146 kb on + strand at 1291.146 kb on + strand at 1291.146 kb on + strand at 1291.146 kb on + strand at 1291.146 kb on + strand at 1291.146 kb on + strand at 1291.146 kb on + strand at 1291.146 kb on + strand at 1291.146 kb on + strand at 1291.146 kb on + strand at 1291.146 kb on + strand at 1291.146 kb on + strand at 1291.146 kb on + strand at 1291.146 kb on + strand at 1291.146 kb on + strand at 1291.146 kb on + strand at 1291.146 kb on + strand at 1291.146 kb on + strand at 1291.146 kb on + strand at 1291.146 kb on + strand at 1291.146 kb on + strand at 1291.146 kb on + strand at 1291.146 kb on + strand at 1291.146 kb on + strand at 1291.146 kb on + strand at 1291.146 kb on + strand at 1291.146 kb on + strand at 1291.146 kb on + strand at 1291.147 kb on - strand at 1291.147 kb on - strand at 1291.147 kb on - strand at 1291.147 kb on - strand at 1291.147 kb on - strand at 1291.147 kb on - strand at 1291.147 kb on - strand at 1291.147 kb on - strand at 1291.147 kb on - strand at 1291.147 kb on - strand at 1291.147 kb on - strand at 1291.147 kb on - strand at 1291.147 kb on - strand at 1291.147 kb on - strand at 1291.147 kb on - strand at 1291.147 kb on - strand at 1291.147 kb on - strand at 1291.148 kb on + strand at 1291.148 kb on + strand at 1291.148 kb on + strand at 1291.148 kb on + strand at 1291.148 kb on + strand at 1291.148 kb on + strand at 1291.148 kb on + strand at 1291.148 kb on + strand at 1291.148 kb on + strand at 1291.148 kb on + strand at 1291.148 kb on + strand at 1291.148 kb on + strand at 1291.148 kb on + strand at 1291.148 kb on + strand at 1291.148 kb on + strand at 1291.148 kb on + strand at 1291.148 kb on + strand at 1291.148 kb on + strand at 1291.148 kb on + strand at 1291.148 kb on + strand at 1291.148 kb on + strand at 1291.148 kb on + strand at 1291.148 kb on + strand at 1291.148 kb on + strand at 1291.148 kb on + strand at 1291.148 kb on + strand at 1291.148 kb on + strand at 1291.148 kb on + strand at 1291.148 kb on + strand at 1291.149 kb on - strand at 1291.149 kb on - strand at 1291.149 kb on - strand at 1291.149 kb on - strand at 1291.149 kb on - strand at 1291.149 kb on - strand at 1291.149 kb on - strand at 1291.149 kb on - strand at 1291.149 kb on - strand at 1291.149 kb on - strand at 1291.149 kb on - strand at 1291.149 kb on - strand at 1291.149 kb on - strand at 1291.149 kb on - strand at 1291.149 kb on - strand at 1291.149 kb on - strand at 1291.149 kb on - strand at 1291.149 kb on - strand at 1291.149 kb on - strand at 1291.149 kb on - strand at 1291.149 kb on - strand at 1291.149 kb on - strand at 1291.149 kb on - strand at 1291.149 kb on - strand at 1291.149 kb on - strand at 1291.150 kb on + strand at 1291.150 kb on + strand at 1291.150 kb on + strand at 1291.150 kb on + strand at 1291.150 kb on + strand at 1291.150 kb on + strand at 1291.150 kb on + strand at 1291.150 kb on + strand at 1291.150 kb on + strand at 1291.150 kb on + strand at 1291.150 kb on + strand at 1291.150 kb on + strand at 1291.150 kb on + strand at 1291.150 kb on + strand at 1291.150 kb on + strand at 1291.150 kb on + strand at 1291.150 kb on + strand at 1291.150 kb on + strand at 1291.150 kb on + strand at 1291.150 kb on + strand at 1291.150 kb on + strand at 1291.151 kb on - strand at 1291.151 kb on - strand at 1291.151 kb on - strand at 1291.151 kb on - strand at 1291.151 kb on - strand at 1291.151 kb on - strand at 1291.151 kb on - strand at 1291.151 kb on - strand at 1291.151 kb on - strand at 1291.151 kb on - strand at 1291.151 kb on - strand at 1291.151 kb on - strand at 1291.151 kb on - strand at 1291.151 kb on - strand at 1291.152 kb on + strand at 1291.152 kb on + strand at 1291.152 kb on + strand at 1291.152 kb on + strand at 1291.152 kb on + strand at 1291.152 kb on + strand at 1291.152 kb on + strand at 1291.152 kb on + strand at 1291.152 kb on + strand at 1291.152 kb on + strand at 1291.152 kb on + strand at 1291.152 kb on + strand at 1291.152 kb on + strand at 1291.153 kb on - strand at 1291.153 kb on - strand at 1291.153 kb on - strand at 1291.153 kb on - strand at 1291.153 kb on - strand at 1291.153 kb on - strand at 1291.153 kb on - strand at 1291.153 kb on - strand at 1291.153 kb on - strand at 1291.153 kb on - strand at 1291.153 kb on - strand at 1291.153 kb on - strand at 1291.153 kb on - strand at 1291.153 kb on - strand at 1291.243 kb on - strand at 1291.372 kb on + strand at 1291.372 kb on + strand at 1291.377 kb on + strand at 1291.377 kb on + strand at 1291.377 kb on + strand at 1291.377 kb on + strand at 1291.377 kb on + strand at 1291.377 kb on + strand at 1291.377 kb on + strand at 1291.377 kb on + strand at 1291.377 kb on + strand at 1291.377 kb on + strand at 1291.378 kb on - strand at 1291.378 kb on - strand at 1291.378 kb on - strand at 1291.402 kb on + strand at 1291.402 kb on + strand at 1291.402 kb on + strand at 1291.403 kb on - strand at 1291.443 kb on + strand, within Psyr_1140 at 1291.444 kb on - strand, within Psyr_1140 at 1291.474 kb on + strand, within Psyr_1140 at 1291.474 kb on + strand, within Psyr_1140 at 1291.475 kb on - strand, within Psyr_1140 at 1291.475 kb on - strand, within Psyr_1140 at 1291.475 kb on - strand, within Psyr_1140 at 1291.475 kb on - strand, within Psyr_1140 at 1291.475 kb on - strand, within Psyr_1140 at 1291.475 kb on - strand, within Psyr_1140 at 1291.475 kb on - strand, within Psyr_1140 at 1291.475 kb on - strand, within Psyr_1140 at 1291.529 kb on - strand, within Psyr_1140 at 1291.734 kb on + strand, within Psyr_1140 at 1291.891 kb on + strand at 1291.892 kb on - strand at 1291.945 kb on + strand at 1291.945 kb on + strand at 1291.946 kb on - strand at 1291.979 kb on + strand at 1291.988 kb on + strand at 1292.024 kb on + strand at 1292.029 kb on - strand at 1292.032 kb on + strand at 1292.032 kb on + strand at 1292.032 kb on + strand at 1292.032 kb on + strand at 1292.032 kb on + strand at 1292.032 kb on + strand at 1292.032 kb on + strand at 1292.032 kb on + strand at 1292.032 kb on + strand at 1292.142 kb on + strand at 1292.142 kb on + strand at 1292.217 kb on + strand at 1292.217 kb on + strand at 1292.781 kb on - strand, within Psyr_1141
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ampicillin 15.6 ug/ml remove 1,290,613 + Psyr_1139 0.82 +0.3 1,290,613 + Psyr_1139 0.82 -0.6 1,290,613 + Psyr_1139 0.82 +0.6 1,290,614 - Psyr_1139 0.82 -0.9 1,290,624 + Psyr_1139 0.83 -0.2 1,290,777 + +0.3 1,290,777 + -0.8 1,290,777 + +1.8 1,290,777 + -2.2 1,290,777 + +0.8 1,290,777 + +0.2 1,290,777 + -1.1 1,290,777 + -0.2 1,290,777 + -0.4 1,290,777 + +0.0 1,290,777 + +0.0 1,290,777 + -0.4 1,290,777 + -0.1 1,290,777 + -0.5 1,290,777 + -0.2 1,290,777 + +1.7 1,290,777 + -0.2 1,290,777 + -0.8 1,290,777 + +0.5 1,290,777 + +0.4 1,290,778 - -1.0 1,290,778 - +0.1 1,290,778 - -0.8 1,290,778 - -0.9 1,290,778 - +0.9 1,290,778 - +1.0 1,290,778 - +1.4 1,290,778 - +0.2 1,290,778 - +1.4 1,290,778 - +0.2 1,290,778 - +0.8 1,290,778 - +0.1 1,290,778 - -0.2 1,290,778 - +1.5 1,290,778 - -0.2 1,290,778 - -0.6 1,290,778 - +1.4 1,290,778 - -1.2 1,290,778 - -1.9 1,290,778 - +0.8 1,290,778 - +0.1 1,290,794 + -2.4 1,290,794 + +0.2 1,290,795 - +0.2 1,290,795 - -0.6 1,290,795 - +0.2 1,290,795 - +0.7 1,290,798 + -0.9 1,290,798 + +2.4 1,290,798 + +0.2 1,290,799 - +0.5 1,290,799 - +0.8 1,290,799 - -2.2 1,290,831 + -1.4 1,290,832 - +0.8 1,291,062 + -0.5 1,291,062 + -0.3 1,291,062 + +0.0 1,291,063 - -0.8 1,291,063 - -1.2 1,291,105 + +0.5 1,291,105 + -0.1 1,291,106 - +1.0 1,291,106 - +0.4 1,291,106 - +0.4 1,291,106 - +0.1 1,291,107 + +0.1 1,291,107 + -0.2 1,291,107 + -0.5 1,291,107 + +0.8 1,291,107 + -0.5 1,291,108 - -0.1 1,291,108 - -1.1 1,291,108 - +0.8 1,291,108 - -1.5 1,291,109 + -0.5 1,291,109 + -0.1 1,291,109 + +0.8 1,291,109 + +0.0 1,291,109 + -0.2 1,291,109 + -0.3 1,291,109 + +0.1 1,291,109 + -0.2 1,291,109 + -0.6 1,291,109 + -0.5 1,291,109 + -0.9 1,291,109 + -0.2 1,291,109 + +0.5 1,291,109 + -0.1 1,291,109 + -0.9 1,291,109 + -0.2 1,291,109 + -0.2 1,291,110 - -0.1 1,291,110 - +0.8 1,291,110 - +1.4 1,291,110 - -1.2 1,291,110 - +0.2 1,291,110 - -0.3 1,291,110 - +0.5 1,291,110 - -1.3 1,291,110 - +0.8 1,291,110 - -0.1 1,291,110 - -0.1 1,291,110 - -1.8 1,291,110 - -0.4 1,291,111 + -2.0 1,291,111 + +1.0 1,291,111 + -2.2 1,291,111 + +0.0 1,291,111 + -0.5 1,291,111 + -0.4 1,291,111 + +0.8 1,291,112 - -0.0 1,291,112 - -1.4 1,291,112 - +0.7 1,291,112 - +1.0 1,291,146 + +0.1 1,291,146 + -0.8 1,291,146 + +0.6 1,291,146 + -0.2 1,291,146 + +1.4 1,291,146 + -0.9 1,291,146 + -1.1 1,291,146 + +1.0 1,291,146 + -1.2 1,291,146 + +0.5 1,291,146 + +0.9 1,291,146 + +0.3 1,291,146 + -0.0 1,291,146 + -2.2 1,291,146 + +1.2 1,291,146 + -0.4 1,291,146 + +0.7 1,291,146 + +0.6 1,291,146 + -0.4 1,291,146 + +0.8 1,291,146 + +2.5 1,291,146 + -1.0 1,291,146 + -0.7 1,291,146 + -0.8 1,291,146 + +0.5 1,291,146 + +0.2 1,291,146 + +0.4 1,291,146 + -0.2 1,291,146 + -1.0 1,291,146 + -1.1 1,291,146 + +0.4 1,291,146 + +1.1 1,291,146 + +0.2 1,291,146 + +1.1 1,291,146 + +1.5 1,291,146 + -1.4 1,291,147 - +0.8 1,291,147 - -0.8 1,291,147 - +0.2 1,291,147 - -0.6 1,291,147 - +0.0 1,291,147 - -1.4 1,291,147 - -0.3 1,291,147 - +1.3 1,291,147 - +0.8 1,291,147 - -0.2 1,291,147 - +0.4 1,291,147 - -0.8 1,291,147 - +0.4 1,291,147 - +1.1 1,291,147 - +0.9 1,291,147 - -3.2 1,291,147 - -1.0 1,291,148 + +1.1 1,291,148 + -0.0 1,291,148 + +0.2 1,291,148 + -0.6 1,291,148 + -1.3 1,291,148 + +0.1 1,291,148 + +0.2 1,291,148 + +0.3 1,291,148 + +0.8 1,291,148 + -0.7 1,291,148 + -0.2 1,291,148 + -0.3 1,291,148 + -0.7 1,291,148 + +0.6 1,291,148 + +0.6 1,291,148 + -0.4 1,291,148 + -0.6 1,291,148 + +2.1 1,291,148 + +0.8 1,291,148 + +1.1 1,291,148 + +0.7 1,291,148 + +0.1 1,291,148 + +0.4 1,291,148 + +0.5 1,291,148 + +0.3 1,291,148 + -0.6 1,291,148 + -0.9 1,291,148 + -2.0 1,291,148 + -0.8 1,291,149 - -1.1 1,291,149 - -0.2 1,291,149 - +2.8 1,291,149 - -0.3 1,291,149 - -1.5 1,291,149 - +0.4 1,291,149 - -0.5 1,291,149 - -0.9 1,291,149 - -2.4 1,291,149 - +0.4 1,291,149 - -0.1 1,291,149 - +0.1 1,291,149 - +1.3 1,291,149 - +0.0 1,291,149 - +0.2 1,291,149 - +0.0 1,291,149 - +0.6 1,291,149 - +0.8 1,291,149 - +0.2 1,291,149 - +0.5 1,291,149 - +0.4 1,291,149 - -0.1 1,291,149 - -0.6 1,291,149 - -0.2 1,291,149 - -0.6 1,291,150 + -0.0 1,291,150 + -0.7 1,291,150 + +0.8 1,291,150 + +0.0 1,291,150 + -0.6 1,291,150 + +0.0 1,291,150 + -0.0 1,291,150 + -0.3 1,291,150 + +0.4 1,291,150 + +0.1 1,291,150 + +0.7 1,291,150 + -0.6 1,291,150 + +0.2 1,291,150 + -0.1 1,291,150 + +0.5 1,291,150 + +0.1 1,291,150 + +1.3 1,291,150 + +2.1 1,291,150 + +0.5 1,291,150 + +0.0 1,291,150 + +0.0 1,291,151 - +0.2 1,291,151 - +2.0 1,291,151 - -0.6 1,291,151 - +1.5 1,291,151 - -0.6 1,291,151 - -1.0 1,291,151 - +1.0 1,291,151 - -0.6 1,291,151 - +0.3 1,291,151 - -0.9 1,291,151 - +1.1 1,291,151 - +1.3 1,291,151 - +0.5 1,291,151 - -1.2 1,291,152 + +0.1 1,291,152 + +0.7 1,291,152 + -0.1 1,291,152 + -0.3 1,291,152 + +1.4 1,291,152 + +1.2 1,291,152 + -0.3 1,291,152 + +0.3 1,291,152 + -1.1 1,291,152 + -1.0 1,291,152 + -0.8 1,291,152 + +0.0 1,291,152 + -0.8 1,291,153 - -0.1 1,291,153 - -0.5 1,291,153 - -0.5 1,291,153 - -0.2 1,291,153 - -0.2 1,291,153 - +1.8 1,291,153 - -0.8 1,291,153 - -0.7 1,291,153 - -1.4 1,291,153 - +0.4 1,291,153 - -0.2 1,291,153 - -0.9 1,291,153 - +0.3 1,291,153 - -1.2 1,291,243 - +1.4 1,291,372 + +0.8 1,291,372 + +0.3 1,291,377 + -0.2 1,291,377 + +1.4 1,291,377 + +0.3 1,291,377 + +1.0 1,291,377 + +0.4 1,291,377 + -0.3 1,291,377 + +2.1 1,291,377 + +0.6 1,291,377 + -0.7 1,291,377 + +2.0 1,291,378 - +0.8 1,291,378 - +0.3 1,291,378 - +0.1 1,291,402 + +1.8 1,291,402 + +0.2 1,291,402 + -1.0 1,291,403 - +0.2 1,291,443 + Psyr_1140 0.12 +0.3 1,291,444 - Psyr_1140 0.12 -0.2 1,291,474 + Psyr_1140 0.18 -1.8 1,291,474 + Psyr_1140 0.18 -1.0 1,291,475 - Psyr_1140 0.18 -0.8 1,291,475 - Psyr_1140 0.18 -0.2 1,291,475 - Psyr_1140 0.18 -0.6 1,291,475 - Psyr_1140 0.18 -1.2 1,291,475 - Psyr_1140 0.18 +0.2 1,291,475 - Psyr_1140 0.18 -0.2 1,291,475 - Psyr_1140 0.18 -0.8 1,291,475 - Psyr_1140 0.18 +0.8 1,291,529 - Psyr_1140 0.28 +0.2 1,291,734 + Psyr_1140 0.69 -0.4 1,291,891 + +0.4 1,291,892 - +2.7 1,291,945 + +0.1 1,291,945 + -0.4 1,291,946 - +0.5 1,291,979 + -0.0 1,291,988 + +0.6 1,292,024 + +2.3 1,292,029 - +1.0 1,292,032 + -0.2 1,292,032 + +0.8 1,292,032 + +0.0 1,292,032 + +1.4 1,292,032 + -0.3 1,292,032 + -0.8 1,292,032 + +0.8 1,292,032 + +1.4 1,292,032 + -2.0 1,292,142 + -0.2 1,292,142 + +0.3 1,292,217 + +0.4 1,292,217 + -0.6 1,292,781 - Psyr_1141 0.45 -1.2
Or see this region's nucleotide sequence