Experiment: KB with Ampicillin 15.6 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0798 and Psyr_0799 are separated by 225 nucleotides Psyr_0799 and Psyr_0800 are separated by 174 nucleotides Psyr_0800 and Psyr_0801 are separated by 119 nucleotides
Psyr_0798: Psyr_0798 - type II secretion system protein E:General secretory system II, protein E, N-terminal, at 903,509 to 905,203
_0798
Psyr_0799: Psyr_0799 - Fimbrial protein pilin, at 905,429 to 905,848
_0799
Psyr_0800: Psyr_0800 - Protein of unknown function DUF1523, at 906,023 to 906,568
_0800
Psyr_0801: Psyr_0801 - conserved hypothetical protein, at 906,688 to 907,686
_0801
Position (kb) 905
906 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 904.468 kb on + strand, within Psyr_0798 at 904.469 kb on - strand, within Psyr_0798 at 904.504 kb on + strand, within Psyr_0798 at 904.568 kb on + strand, within Psyr_0798 at 904.569 kb on - strand, within Psyr_0798 at 904.587 kb on + strand, within Psyr_0798 at 904.616 kb on + strand, within Psyr_0798 at 904.616 kb on + strand, within Psyr_0798 at 904.617 kb on - strand, within Psyr_0798 at 904.617 kb on - strand, within Psyr_0798 at 904.617 kb on - strand, within Psyr_0798 at 904.688 kb on - strand, within Psyr_0798 at 904.691 kb on + strand, within Psyr_0798 at 904.691 kb on + strand, within Psyr_0798 at 905.082 kb on + strand at 905.082 kb on + strand at 905.082 kb on + strand at 905.083 kb on - strand at 905.083 kb on - strand at 905.083 kb on - strand at 905.083 kb on - strand at 905.121 kb on + strand at 905.121 kb on + strand at 905.121 kb on + strand at 905.146 kb on + strand at 905.146 kb on + strand at 905.146 kb on + strand at 905.147 kb on - strand at 905.147 kb on - strand at 905.150 kb on + strand at 905.150 kb on + strand at 905.150 kb on + strand at 905.150 kb on + strand at 905.150 kb on + strand at 905.150 kb on + strand at 905.151 kb on - strand at 905.151 kb on - strand at 905.151 kb on - strand at 905.151 kb on - strand at 905.151 kb on - strand at 905.151 kb on - strand at 905.151 kb on - strand at 905.151 kb on - strand at 905.203 kb on + strand at 905.203 kb on + strand at 905.204 kb on - strand at 905.235 kb on - strand at 905.236 kb on + strand at 905.237 kb on - strand at 905.237 kb on - strand at 905.237 kb on - strand at 905.237 kb on - strand at 905.237 kb on - strand at 905.238 kb on - strand at 905.262 kb on + strand at 905.262 kb on + strand at 905.262 kb on + strand at 905.263 kb on - strand at 905.263 kb on - strand at 905.263 kb on - strand at 905.263 kb on - strand at 905.315 kb on + strand at 905.315 kb on + strand at 905.316 kb on - strand at 905.316 kb on - strand at 905.316 kb on - strand at 905.337 kb on + strand at 905.337 kb on + strand at 905.343 kb on + strand at 905.404 kb on + strand at 905.404 kb on + strand at 905.404 kb on + strand at 905.405 kb on - strand at 905.405 kb on - strand at 905.405 kb on - strand at 905.405 kb on - strand at 905.405 kb on - strand at 905.424 kb on + strand at 905.424 kb on + strand at 905.424 kb on + strand at 905.424 kb on + strand at 905.424 kb on + strand at 905.424 kb on + strand at 905.424 kb on + strand at 905.425 kb on - strand at 905.425 kb on - strand at 905.425 kb on - strand at 905.425 kb on - strand at 905.425 kb on - strand at 905.425 kb on - strand at 905.425 kb on - strand at 905.425 kb on - strand at 905.425 kb on - strand at 905.428 kb on + strand at 905.428 kb on + strand at 905.428 kb on + strand at 905.429 kb on - strand at 905.429 kb on - strand at 905.429 kb on - strand at 905.429 kb on - strand at 905.429 kb on - strand at 905.429 kb on - strand at 905.429 kb on - strand at 905.449 kb on + strand at 905.450 kb on - strand at 905.489 kb on - strand, within Psyr_0799 at 905.489 kb on - strand, within Psyr_0799 at 905.526 kb on - strand, within Psyr_0799 at 905.527 kb on + strand, within Psyr_0799 at 905.527 kb on + strand, within Psyr_0799 at 905.527 kb on + strand, within Psyr_0799 at 905.527 kb on + strand, within Psyr_0799 at 905.527 kb on + strand, within Psyr_0799 at 905.527 kb on + strand, within Psyr_0799 at 905.527 kb on + strand, within Psyr_0799 at 905.528 kb on - strand, within Psyr_0799 at 905.528 kb on - strand, within Psyr_0799 at 905.528 kb on - strand, within Psyr_0799 at 905.570 kb on - strand, within Psyr_0799 at 905.573 kb on + strand, within Psyr_0799 at 905.574 kb on - strand, within Psyr_0799 at 905.574 kb on - strand, within Psyr_0799 at 905.626 kb on + strand, within Psyr_0799 at 905.627 kb on - strand, within Psyr_0799 at 905.627 kb on - strand, within Psyr_0799 at 905.638 kb on + strand, within Psyr_0799 at 905.639 kb on - strand, within Psyr_0799 at 905.639 kb on - strand, within Psyr_0799 at 905.662 kb on + strand, within Psyr_0799 at 905.716 kb on + strand, within Psyr_0799 at 905.717 kb on - strand, within Psyr_0799 at 905.717 kb on - strand, within Psyr_0799 at 905.722 kb on + strand, within Psyr_0799 at 905.722 kb on + strand, within Psyr_0799 at 905.723 kb on - strand, within Psyr_0799 at 905.723 kb on - strand, within Psyr_0799 at 905.723 kb on - strand, within Psyr_0799 at 905.725 kb on + strand, within Psyr_0799 at 905.726 kb on - strand, within Psyr_0799 at 905.733 kb on + strand, within Psyr_0799 at 905.734 kb on - strand, within Psyr_0799 at 905.734 kb on - strand, within Psyr_0799 at 905.779 kb on + strand, within Psyr_0799 at 905.779 kb on + strand, within Psyr_0799 at 905.779 kb on + strand, within Psyr_0799 at 905.839 kb on + strand at 905.839 kb on + strand at 905.839 kb on + strand at 905.846 kb on + strand at 905.847 kb on - strand at 905.861 kb on + strand at 905.861 kb on + strand at 905.861 kb on + strand at 905.862 kb on - strand at 905.862 kb on - strand at 905.862 kb on - strand at 905.881 kb on + strand at 906.007 kb on + strand at 906.024 kb on + strand at 906.058 kb on + strand at 906.058 kb on + strand at 906.058 kb on + strand at 906.059 kb on - strand at 906.217 kb on - strand, within Psyr_0800 at 906.219 kb on + strand, within Psyr_0800 at 906.256 kb on - strand, within Psyr_0800 at 906.381 kb on + strand, within Psyr_0800 at 906.381 kb on + strand, within Psyr_0800 at 906.381 kb on + strand, within Psyr_0800 at 906.381 kb on + strand, within Psyr_0800 at 906.381 kb on + strand, within Psyr_0800 at 906.381 kb on + strand, within Psyr_0800 at 906.381 kb on + strand, within Psyr_0800 at 906.382 kb on - strand, within Psyr_0800 at 906.382 kb on - strand, within Psyr_0800 at 906.382 kb on - strand, within Psyr_0800 at 906.382 kb on - strand, within Psyr_0800 at 906.495 kb on + strand, within Psyr_0800 at 906.495 kb on + strand, within Psyr_0800 at 906.495 kb on + strand, within Psyr_0800 at 906.495 kb on + strand, within Psyr_0800 at 906.495 kb on + strand, within Psyr_0800 at 906.495 kb on + strand, within Psyr_0800 at 906.496 kb on - strand, within Psyr_0800 at 906.496 kb on - strand, within Psyr_0800 at 906.496 kb on - strand, within Psyr_0800 at 906.496 kb on - strand, within Psyr_0800 at 906.496 kb on - strand, within Psyr_0800 at 906.496 kb on - strand, within Psyr_0800 at 906.496 kb on - strand, within Psyr_0800 at 906.498 kb on + strand, within Psyr_0800 at 906.498 kb on + strand, within Psyr_0800 at 906.498 kb on + strand, within Psyr_0800 at 906.499 kb on - strand, within Psyr_0800 at 906.499 kb on - strand, within Psyr_0800 at 906.499 kb on - strand, within Psyr_0800 at 906.499 kb on - strand, within Psyr_0800 at 906.499 kb on - strand, within Psyr_0800 at 906.507 kb on - strand, within Psyr_0800 at 906.533 kb on + strand at 906.569 kb on - strand at 906.637 kb on + strand at 906.638 kb on - strand at 906.638 kb on - strand at 906.734 kb on + strand at 906.734 kb on + strand at 906.735 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ampicillin 15.6 ug/ml remove 904,468 + Psyr_0798 0.57 +0.6 904,469 - Psyr_0798 0.57 +0.1 904,504 + Psyr_0798 0.59 +1.6 904,568 + Psyr_0798 0.62 -1.6 904,569 - Psyr_0798 0.63 +0.4 904,587 + Psyr_0798 0.64 -0.2 904,616 + Psyr_0798 0.65 -1.0 904,616 + Psyr_0798 0.65 -1.8 904,617 - Psyr_0798 0.65 -1.0 904,617 - Psyr_0798 0.65 -0.6 904,617 - Psyr_0798 0.65 +0.6 904,688 - Psyr_0798 0.70 -0.6 904,691 + Psyr_0798 0.70 +0.8 904,691 + Psyr_0798 0.70 -0.8 905,082 + +0.6 905,082 + +0.9 905,082 + -1.2 905,083 - -0.2 905,083 - -0.9 905,083 - +1.1 905,083 - -0.2 905,121 + -1.0 905,121 + +0.5 905,121 + +1.7 905,146 + +0.1 905,146 + +0.3 905,146 + +0.3 905,147 - -0.9 905,147 - +0.4 905,150 + +0.7 905,150 + -1.8 905,150 + -0.5 905,150 + +0.1 905,150 + -0.8 905,150 + +1.3 905,151 - -0.3 905,151 - +1.2 905,151 - +0.7 905,151 - -0.2 905,151 - -0.0 905,151 - +0.2 905,151 - +0.1 905,151 - +2.2 905,203 + +0.3 905,203 + +2.0 905,204 - -0.2 905,235 - -0.5 905,236 + +0.6 905,237 - -0.2 905,237 - +0.5 905,237 - -1.5 905,237 - +0.4 905,237 - +1.0 905,238 - -0.2 905,262 + +0.5 905,262 + -1.2 905,262 + -0.0 905,263 - -0.5 905,263 - -0.5 905,263 - +0.8 905,263 - +1.0 905,315 + +0.0 905,315 + -1.2 905,316 - +0.1 905,316 - +0.2 905,316 - +1.4 905,337 + -1.0 905,337 + -0.1 905,343 + +1.5 905,404 + +1.2 905,404 + -2.2 905,404 + -0.5 905,405 - -0.3 905,405 - -0.4 905,405 - -0.3 905,405 - +0.8 905,405 - +0.2 905,424 + -0.8 905,424 + +1.1 905,424 + +1.6 905,424 + +1.0 905,424 + -0.2 905,424 + +0.3 905,424 + +0.1 905,425 - +0.1 905,425 - +0.0 905,425 - +1.8 905,425 - -0.0 905,425 - -2.4 905,425 - +2.2 905,425 - +2.4 905,425 - -0.2 905,425 - +0.2 905,428 + -0.2 905,428 + +1.6 905,428 + -0.5 905,429 - -0.3 905,429 - +1.2 905,429 - -1.2 905,429 - -0.2 905,429 - +0.2 905,429 - -0.3 905,429 - -0.9 905,449 + +1.8 905,450 - +1.4 905,489 - Psyr_0799 0.14 -1.5 905,489 - Psyr_0799 0.14 +0.8 905,526 - Psyr_0799 0.23 +0.8 905,527 + Psyr_0799 0.23 -1.6 905,527 + Psyr_0799 0.23 +0.2 905,527 + Psyr_0799 0.23 +0.2 905,527 + Psyr_0799 0.23 +1.2 905,527 + Psyr_0799 0.23 +1.2 905,527 + Psyr_0799 0.23 -1.7 905,527 + Psyr_0799 0.23 +0.1 905,528 - Psyr_0799 0.24 -0.5 905,528 - Psyr_0799 0.24 +0.8 905,528 - Psyr_0799 0.24 -1.6 905,570 - Psyr_0799 0.34 -1.0 905,573 + Psyr_0799 0.34 +0.4 905,574 - Psyr_0799 0.35 -0.4 905,574 - Psyr_0799 0.35 +0.6 905,626 + Psyr_0799 0.47 -0.6 905,627 - Psyr_0799 0.47 +0.8 905,627 - Psyr_0799 0.47 -0.2 905,638 + Psyr_0799 0.50 -0.8 905,639 - Psyr_0799 0.50 +2.1 905,639 - Psyr_0799 0.50 -1.8 905,662 + Psyr_0799 0.55 -0.4 905,716 + Psyr_0799 0.68 +0.3 905,717 - Psyr_0799 0.69 -1.8 905,717 - Psyr_0799 0.69 +0.6 905,722 + Psyr_0799 0.70 +0.2 905,722 + Psyr_0799 0.70 +0.8 905,723 - Psyr_0799 0.70 -1.3 905,723 - Psyr_0799 0.70 +0.0 905,723 - Psyr_0799 0.70 -0.4 905,725 + Psyr_0799 0.70 +0.8 905,726 - Psyr_0799 0.71 -0.3 905,733 + Psyr_0799 0.72 -1.0 905,734 - Psyr_0799 0.73 -0.8 905,734 - Psyr_0799 0.73 -3.0 905,779 + Psyr_0799 0.83 +0.4 905,779 + Psyr_0799 0.83 -0.4 905,779 + Psyr_0799 0.83 +0.6 905,839 + -0.8 905,839 + -0.4 905,839 + +1.4 905,846 + -0.4 905,847 - +1.0 905,861 + +0.8 905,861 + -0.2 905,861 + +2.4 905,862 - -1.8 905,862 - -1.6 905,862 - +0.3 905,881 + -0.2 906,007 + +0.3 906,024 + -1.6 906,058 + -0.5 906,058 + +1.8 906,058 + +0.5 906,059 - -0.6 906,217 - Psyr_0800 0.36 -0.9 906,219 + Psyr_0800 0.36 -0.2 906,256 - Psyr_0800 0.43 +0.8 906,381 + Psyr_0800 0.66 -0.6 906,381 + Psyr_0800 0.66 +1.0 906,381 + Psyr_0800 0.66 -0.2 906,381 + Psyr_0800 0.66 -0.5 906,381 + Psyr_0800 0.66 +0.8 906,381 + Psyr_0800 0.66 -1.6 906,381 + Psyr_0800 0.66 +0.2 906,382 - Psyr_0800 0.66 -0.5 906,382 - Psyr_0800 0.66 -1.4 906,382 - Psyr_0800 0.66 +0.2 906,382 - Psyr_0800 0.66 -0.4 906,495 + Psyr_0800 0.86 +0.3 906,495 + Psyr_0800 0.86 +0.2 906,495 + Psyr_0800 0.86 +1.1 906,495 + Psyr_0800 0.86 +1.1 906,495 + Psyr_0800 0.86 +0.4 906,495 + Psyr_0800 0.86 +0.2 906,496 - Psyr_0800 0.87 -0.3 906,496 - Psyr_0800 0.87 +0.8 906,496 - Psyr_0800 0.87 +0.2 906,496 - Psyr_0800 0.87 -0.3 906,496 - Psyr_0800 0.87 +0.6 906,496 - Psyr_0800 0.87 +0.0 906,496 - Psyr_0800 0.87 -0.5 906,498 + Psyr_0800 0.87 +0.5 906,498 + Psyr_0800 0.87 -2.3 906,498 + Psyr_0800 0.87 +1.7 906,499 - Psyr_0800 0.87 +0.7 906,499 - Psyr_0800 0.87 -0.4 906,499 - Psyr_0800 0.87 -1.2 906,499 - Psyr_0800 0.87 -0.6 906,499 - Psyr_0800 0.87 +0.2 906,507 - Psyr_0800 0.89 +0.0 906,533 + +0.8 906,569 - +0.2 906,637 + +0.5 906,638 - +1.5 906,638 - +1.0 906,734 + -1.2 906,734 + -0.5 906,735 - -1.3
Or see this region's nucleotide sequence