Experiment: KB with Acriflavine 7.75 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4694 and Psyr_4695 overlap by 1 nucleotides Psyr_4695 and Psyr_4696 overlap by 17 nucleotides Psyr_4696 and Psyr_4697 are separated by 192 nucleotides
Psyr_4694: Psyr_4694 - Binding-protein-dependent transport systems inner membrane component, at 5,562,573 to 5,563,442
_4694
Psyr_4695: Psyr_4695 - extracellular solute-binding protein, family 1, at 5,563,442 to 5,564,443
_4695
Psyr_4696: Psyr_4696 - transcriptional regulator, LacI family, at 5,564,427 to 5,565,446
_4696
Psyr_4697: Psyr_4697 - Aminoglycoside phosphotransferase, at 5,565,639 to 5,566,613
_4697
Position (kb) 5564
5565
5566 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5563.443 kb on + strand at 5563.443 kb on + strand at 5563.443 kb on + strand at 5563.443 kb on + strand at 5563.443 kb on + strand at 5563.443 kb on + strand at 5563.443 kb on + strand at 5563.444 kb on - strand at 5563.444 kb on - strand at 5563.444 kb on - strand at 5563.444 kb on - strand at 5563.444 kb on - strand at 5563.444 kb on - strand at 5563.444 kb on - strand at 5563.444 kb on - strand at 5563.461 kb on + strand at 5563.593 kb on + strand, within Psyr_4695 at 5563.593 kb on + strand, within Psyr_4695 at 5563.594 kb on - strand, within Psyr_4695 at 5563.594 kb on - strand, within Psyr_4695 at 5563.696 kb on - strand, within Psyr_4695 at 5563.782 kb on + strand, within Psyr_4695 at 5563.824 kb on + strand, within Psyr_4695 at 5563.825 kb on - strand, within Psyr_4695 at 5563.875 kb on + strand, within Psyr_4695 at 5563.876 kb on - strand, within Psyr_4695 at 5563.876 kb on - strand, within Psyr_4695 at 5563.944 kb on + strand, within Psyr_4695 at 5563.992 kb on + strand, within Psyr_4695 at 5563.992 kb on + strand, within Psyr_4695 at 5563.992 kb on + strand, within Psyr_4695 at 5563.992 kb on + strand, within Psyr_4695 at 5563.993 kb on - strand, within Psyr_4695 at 5563.993 kb on - strand, within Psyr_4695 at 5564.151 kb on + strand, within Psyr_4695 at 5564.151 kb on + strand, within Psyr_4695 at 5564.151 kb on + strand, within Psyr_4695 at 5564.151 kb on + strand, within Psyr_4695 at 5564.152 kb on - strand, within Psyr_4695 at 5564.152 kb on - strand, within Psyr_4695 at 5564.152 kb on - strand, within Psyr_4695 at 5564.152 kb on - strand, within Psyr_4695 at 5564.152 kb on - strand, within Psyr_4695 at 5564.152 kb on - strand, within Psyr_4695 at 5564.203 kb on - strand, within Psyr_4695 at 5564.205 kb on + strand, within Psyr_4695 at 5564.205 kb on + strand, within Psyr_4695 at 5564.205 kb on + strand, within Psyr_4695 at 5564.205 kb on + strand, within Psyr_4695 at 5564.206 kb on - strand, within Psyr_4695 at 5564.206 kb on - strand, within Psyr_4695 at 5564.206 kb on - strand, within Psyr_4695 at 5564.358 kb on + strand at 5564.359 kb on - strand at 5564.429 kb on - strand at 5564.751 kb on + strand, within Psyr_4696 at 5564.751 kb on + strand, within Psyr_4696 at 5564.751 kb on + strand, within Psyr_4696 at 5564.786 kb on + strand, within Psyr_4696 at 5564.786 kb on + strand, within Psyr_4696 at 5564.787 kb on - strand, within Psyr_4696 at 5564.787 kb on - strand, within Psyr_4696 at 5564.787 kb on - strand, within Psyr_4696 at 5564.858 kb on - strand, within Psyr_4696 at 5565.151 kb on + strand, within Psyr_4696 at 5565.152 kb on - strand, within Psyr_4696 at 5565.152 kb on - strand, within Psyr_4696 at 5565.176 kb on + strand, within Psyr_4696 at 5565.178 kb on + strand, within Psyr_4696 at 5565.366 kb on + strand at 5565.366 kb on + strand at 5565.366 kb on + strand at 5565.366 kb on + strand at 5565.367 kb on - strand at 5565.367 kb on - strand at 5565.485 kb on + strand at 5565.486 kb on - strand at 5565.555 kb on + strand at 5565.593 kb on + strand at 5565.593 kb on + strand at 5565.634 kb on + strand at 5565.635 kb on - strand at 5565.635 kb on - strand at 5565.662 kb on + strand at 5565.662 kb on + strand at 5565.662 kb on + strand at 5565.662 kb on + strand at 5565.662 kb on + strand at 5565.662 kb on + strand at 5565.663 kb on - strand at 5565.663 kb on - strand at 5565.663 kb on - strand at 5565.663 kb on - strand at 5565.753 kb on + strand, within Psyr_4697 at 5565.754 kb on - strand, within Psyr_4697 at 5566.013 kb on - strand, within Psyr_4697 at 5566.323 kb on - strand, within Psyr_4697 at 5566.390 kb on - strand, within Psyr_4697
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acriflavine 7.75 ug/ml remove 5,563,443 + -0.7 5,563,443 + -0.2 5,563,443 + +0.6 5,563,443 + -0.8 5,563,443 + -1.3 5,563,443 + -1.2 5,563,443 + +1.7 5,563,444 - +1.3 5,563,444 - +0.5 5,563,444 - +0.1 5,563,444 - +0.4 5,563,444 - +0.4 5,563,444 - +2.4 5,563,444 - +2.2 5,563,444 - -1.0 5,563,461 + +0.9 5,563,593 + Psyr_4695 0.15 +1.6 5,563,593 + Psyr_4695 0.15 +0.2 5,563,594 - Psyr_4695 0.15 +0.3 5,563,594 - Psyr_4695 0.15 +0.5 5,563,696 - Psyr_4695 0.25 -0.6 5,563,782 + Psyr_4695 0.34 -0.1 5,563,824 + Psyr_4695 0.38 +0.7 5,563,825 - Psyr_4695 0.38 +1.2 5,563,875 + Psyr_4695 0.43 +0.8 5,563,876 - Psyr_4695 0.43 -1.3 5,563,876 - Psyr_4695 0.43 -1.1 5,563,944 + Psyr_4695 0.50 -0.0 5,563,992 + Psyr_4695 0.55 +0.4 5,563,992 + Psyr_4695 0.55 -1.6 5,563,992 + Psyr_4695 0.55 +0.3 5,563,992 + Psyr_4695 0.55 -1.6 5,563,993 - Psyr_4695 0.55 +1.0 5,563,993 - Psyr_4695 0.55 -0.5 5,564,151 + Psyr_4695 0.71 +0.6 5,564,151 + Psyr_4695 0.71 +0.1 5,564,151 + Psyr_4695 0.71 +0.5 5,564,151 + Psyr_4695 0.71 +0.8 5,564,152 - Psyr_4695 0.71 -1.2 5,564,152 - Psyr_4695 0.71 -0.0 5,564,152 - Psyr_4695 0.71 -0.3 5,564,152 - Psyr_4695 0.71 -0.2 5,564,152 - Psyr_4695 0.71 -1.7 5,564,152 - Psyr_4695 0.71 +2.0 5,564,203 - Psyr_4695 0.76 +0.4 5,564,205 + Psyr_4695 0.76 +0.1 5,564,205 + Psyr_4695 0.76 +1.1 5,564,205 + Psyr_4695 0.76 -0.2 5,564,205 + Psyr_4695 0.76 -0.2 5,564,206 - Psyr_4695 0.76 +1.3 5,564,206 - Psyr_4695 0.76 -0.1 5,564,206 - Psyr_4695 0.76 -0.5 5,564,358 + +0.1 5,564,359 - -0.8 5,564,429 - -0.2 5,564,751 + Psyr_4696 0.32 -1.7 5,564,751 + Psyr_4696 0.32 -2.0 5,564,751 + Psyr_4696 0.32 -1.6 5,564,786 + Psyr_4696 0.35 -0.0 5,564,786 + Psyr_4696 0.35 +0.1 5,564,787 - Psyr_4696 0.35 -0.6 5,564,787 - Psyr_4696 0.35 -0.6 5,564,787 - Psyr_4696 0.35 -0.2 5,564,858 - Psyr_4696 0.42 -0.1 5,565,151 + Psyr_4696 0.71 -0.4 5,565,152 - Psyr_4696 0.71 -1.5 5,565,152 - Psyr_4696 0.71 -0.9 5,565,176 + Psyr_4696 0.73 -0.1 5,565,178 + Psyr_4696 0.74 +0.1 5,565,366 + +2.0 5,565,366 + -0.0 5,565,366 + +0.0 5,565,366 + -0.3 5,565,367 - -0.8 5,565,367 - +0.7 5,565,485 + +1.2 5,565,486 - -0.9 5,565,555 + -1.5 5,565,593 + +0.2 5,565,593 + +0.9 5,565,634 + -0.0 5,565,635 - -0.5 5,565,635 - +1.0 5,565,662 + -1.8 5,565,662 + -0.2 5,565,662 + -1.6 5,565,662 + +2.0 5,565,662 + -1.0 5,565,662 + +0.3 5,565,663 - -0.2 5,565,663 - -0.0 5,565,663 - -0.5 5,565,663 - +2.0 5,565,753 + Psyr_4697 0.12 -1.2 5,565,754 - Psyr_4697 0.12 +0.7 5,566,013 - Psyr_4697 0.38 +1.1 5,566,323 - Psyr_4697 0.70 +0.4 5,566,390 - Psyr_4697 0.77 -0.2
Or see this region's nucleotide sequence