Experiment: KB with Acriflavine 7.75 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4609 and Psyr_4610 are separated by 70 nucleotides Psyr_4610 and Psyr_4611 overlap by 4 nucleotides Psyr_4611 and Psyr_4612 are separated by 186 nucleotides
Psyr_4609: Psyr_4609 - anthranilate synthase, component I, at 5,466,494 to 5,467,975
_4609
Psyr_4610: Psyr_4610 - phosphoglycolate phosphatase, at 5,468,046 to 5,468,864
_4610
Psyr_4611: Psyr_4611 - ribulose-5-phosphate 3-epimerase, at 5,468,861 to 5,469,535
_4611
Psyr_4612: Psyr_4612 - Binding-protein-dependent transport systems inner membrane component, at 5,469,722 to 5,470,543
_4612
Position (kb) 5468
5469 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5467.149 kb on + strand, within Psyr_4609 at 5467.149 kb on + strand, within Psyr_4609 at 5467.149 kb on + strand, within Psyr_4609 at 5467.149 kb on + strand, within Psyr_4609 at 5467.149 kb on + strand, within Psyr_4609 at 5467.149 kb on + strand, within Psyr_4609 at 5467.150 kb on - strand, within Psyr_4609 at 5467.150 kb on - strand, within Psyr_4609 at 5467.150 kb on - strand, within Psyr_4609 at 5467.150 kb on - strand, within Psyr_4609 at 5467.150 kb on - strand, within Psyr_4609 at 5467.150 kb on - strand, within Psyr_4609 at 5467.150 kb on - strand, within Psyr_4609 at 5467.150 kb on - strand, within Psyr_4609 at 5467.150 kb on - strand, within Psyr_4609 at 5467.150 kb on - strand, within Psyr_4609 at 5467.150 kb on - strand, within Psyr_4609 at 5467.150 kb on - strand, within Psyr_4609 at 5467.150 kb on - strand, within Psyr_4609 at 5467.150 kb on - strand, within Psyr_4609 at 5467.150 kb on - strand, within Psyr_4609 at 5467.153 kb on + strand, within Psyr_4609 at 5467.153 kb on + strand, within Psyr_4609 at 5467.153 kb on + strand, within Psyr_4609 at 5467.153 kb on + strand, within Psyr_4609 at 5467.153 kb on + strand, within Psyr_4609 at 5467.153 kb on + strand, within Psyr_4609 at 5467.153 kb on + strand, within Psyr_4609 at 5467.153 kb on + strand, within Psyr_4609 at 5467.153 kb on + strand, within Psyr_4609 at 5467.153 kb on + strand, within Psyr_4609 at 5467.153 kb on + strand, within Psyr_4609 at 5467.153 kb on + strand, within Psyr_4609 at 5467.153 kb on + strand, within Psyr_4609 at 5467.154 kb on - strand, within Psyr_4609 at 5467.154 kb on - strand, within Psyr_4609 at 5467.154 kb on - strand, within Psyr_4609 at 5467.154 kb on - strand, within Psyr_4609 at 5467.154 kb on - strand, within Psyr_4609 at 5467.154 kb on - strand, within Psyr_4609 at 5467.154 kb on - strand, within Psyr_4609 at 5467.154 kb on - strand, within Psyr_4609 at 5467.154 kb on - strand, within Psyr_4609 at 5467.154 kb on - strand, within Psyr_4609 at 5467.154 kb on - strand, within Psyr_4609 at 5467.154 kb on - strand, within Psyr_4609 at 5467.154 kb on - strand, within Psyr_4609 at 5467.154 kb on - strand, within Psyr_4609 at 5467.154 kb on - strand, within Psyr_4609 at 5467.155 kb on + strand, within Psyr_4609 at 5467.155 kb on + strand, within Psyr_4609 at 5467.155 kb on + strand, within Psyr_4609 at 5467.155 kb on + strand, within Psyr_4609 at 5467.155 kb on + strand, within Psyr_4609 at 5467.155 kb on + strand, within Psyr_4609 at 5467.155 kb on + strand, within Psyr_4609 at 5467.155 kb on + strand, within Psyr_4609 at 5467.155 kb on + strand, within Psyr_4609 at 5467.156 kb on - strand, within Psyr_4609 at 5467.156 kb on - strand, within Psyr_4609 at 5467.156 kb on - strand, within Psyr_4609 at 5467.156 kb on - strand, within Psyr_4609 at 5467.156 kb on - strand, within Psyr_4609 at 5467.156 kb on - strand, within Psyr_4609 at 5467.156 kb on - strand, within Psyr_4609 at 5467.238 kb on + strand, within Psyr_4609 at 5467.269 kb on + strand, within Psyr_4609 at 5467.269 kb on + strand, within Psyr_4609 at 5467.269 kb on + strand, within Psyr_4609 at 5467.269 kb on + strand, within Psyr_4609 at 5467.270 kb on - strand, within Psyr_4609 at 5467.270 kb on - strand, within Psyr_4609 at 5467.270 kb on - strand, within Psyr_4609 at 5467.270 kb on - strand, within Psyr_4609 at 5467.270 kb on - strand, within Psyr_4609 at 5467.270 kb on - strand, within Psyr_4609 at 5467.270 kb on - strand, within Psyr_4609 at 5467.283 kb on - strand, within Psyr_4609 at 5467.299 kb on + strand, within Psyr_4609 at 5467.435 kb on - strand, within Psyr_4609 at 5467.587 kb on + strand, within Psyr_4609 at 5467.588 kb on - strand, within Psyr_4609 at 5467.588 kb on - strand, within Psyr_4609 at 5467.665 kb on + strand, within Psyr_4609 at 5467.845 kb on + strand at 5467.845 kb on + strand at 5467.845 kb on + strand at 5467.845 kb on + strand at 5467.845 kb on + strand at 5467.845 kb on + strand at 5467.846 kb on - strand at 5467.875 kb on + strand at 5467.876 kb on - strand at 5467.935 kb on + strand at 5467.936 kb on - strand at 5467.936 kb on - strand at 5468.011 kb on - strand at 5468.011 kb on - strand at 5468.157 kb on + strand, within Psyr_4610 at 5468.157 kb on + strand, within Psyr_4610 at 5468.157 kb on + strand, within Psyr_4610 at 5468.157 kb on + strand, within Psyr_4610 at 5468.157 kb on + strand, within Psyr_4610 at 5468.158 kb on - strand, within Psyr_4610 at 5468.158 kb on - strand, within Psyr_4610 at 5468.158 kb on - strand, within Psyr_4610 at 5468.158 kb on - strand, within Psyr_4610 at 5468.254 kb on + strand, within Psyr_4610 at 5468.255 kb on - strand, within Psyr_4610 at 5468.261 kb on - strand, within Psyr_4610 at 5468.588 kb on - strand, within Psyr_4610 at 5469.574 kb on + strand at 5469.575 kb on - strand at 5469.575 kb on - strand at 5469.705 kb on + strand at 5469.705 kb on + strand at 5469.705 kb on + strand at 5469.705 kb on + strand at 5469.705 kb on + strand at 5469.706 kb on - strand at 5469.706 kb on - strand at 5469.706 kb on - strand at 5469.706 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acriflavine 7.75 ug/ml remove 5,467,149 + Psyr_4609 0.44 -1.2 5,467,149 + Psyr_4609 0.44 +0.4 5,467,149 + Psyr_4609 0.44 -2.0 5,467,149 + Psyr_4609 0.44 -0.0 5,467,149 + Psyr_4609 0.44 -0.0 5,467,149 + Psyr_4609 0.44 -0.6 5,467,150 - Psyr_4609 0.44 -1.0 5,467,150 - Psyr_4609 0.44 -0.5 5,467,150 - Psyr_4609 0.44 +0.1 5,467,150 - Psyr_4609 0.44 +0.3 5,467,150 - Psyr_4609 0.44 -1.0 5,467,150 - Psyr_4609 0.44 +0.3 5,467,150 - Psyr_4609 0.44 +0.6 5,467,150 - Psyr_4609 0.44 -1.8 5,467,150 - Psyr_4609 0.44 -1.6 5,467,150 - Psyr_4609 0.44 -0.3 5,467,150 - Psyr_4609 0.44 -0.2 5,467,150 - Psyr_4609 0.44 -2.3 5,467,150 - Psyr_4609 0.44 +0.0 5,467,150 - Psyr_4609 0.44 -0.6 5,467,150 - Psyr_4609 0.44 -0.9 5,467,153 + Psyr_4609 0.44 +2.6 5,467,153 + Psyr_4609 0.44 -1.6 5,467,153 + Psyr_4609 0.44 +0.4 5,467,153 + Psyr_4609 0.44 -1.1 5,467,153 + Psyr_4609 0.44 -1.2 5,467,153 + Psyr_4609 0.44 +0.9 5,467,153 + Psyr_4609 0.44 +0.1 5,467,153 + Psyr_4609 0.44 +2.0 5,467,153 + Psyr_4609 0.44 +0.0 5,467,153 + Psyr_4609 0.44 +1.2 5,467,153 + Psyr_4609 0.44 -0.3 5,467,153 + Psyr_4609 0.44 +1.1 5,467,153 + Psyr_4609 0.44 -1.5 5,467,154 - Psyr_4609 0.45 +3.0 5,467,154 - Psyr_4609 0.45 -2.0 5,467,154 - Psyr_4609 0.45 -3.2 5,467,154 - Psyr_4609 0.45 -0.9 5,467,154 - Psyr_4609 0.45 +2.3 5,467,154 - Psyr_4609 0.45 -2.3 5,467,154 - Psyr_4609 0.45 -0.6 5,467,154 - Psyr_4609 0.45 -0.4 5,467,154 - Psyr_4609 0.45 -0.3 5,467,154 - Psyr_4609 0.45 -0.7 5,467,154 - Psyr_4609 0.45 +0.6 5,467,154 - Psyr_4609 0.45 +0.1 5,467,154 - Psyr_4609 0.45 -0.2 5,467,154 - Psyr_4609 0.45 -0.3 5,467,154 - Psyr_4609 0.45 +0.0 5,467,155 + Psyr_4609 0.45 -0.3 5,467,155 + Psyr_4609 0.45 -1.7 5,467,155 + Psyr_4609 0.45 -2.4 5,467,155 + Psyr_4609 0.45 -0.9 5,467,155 + Psyr_4609 0.45 -0.2 5,467,155 + Psyr_4609 0.45 -1.1 5,467,155 + Psyr_4609 0.45 -0.1 5,467,155 + Psyr_4609 0.45 +1.0 5,467,155 + Psyr_4609 0.45 -0.1 5,467,156 - Psyr_4609 0.45 -0.9 5,467,156 - Psyr_4609 0.45 +1.2 5,467,156 - Psyr_4609 0.45 -2.3 5,467,156 - Psyr_4609 0.45 +0.3 5,467,156 - Psyr_4609 0.45 -0.4 5,467,156 - Psyr_4609 0.45 -0.6 5,467,156 - Psyr_4609 0.45 -1.7 5,467,238 + Psyr_4609 0.50 +0.3 5,467,269 + Psyr_4609 0.52 +0.4 5,467,269 + Psyr_4609 0.52 +0.5 5,467,269 + Psyr_4609 0.52 -1.3 5,467,269 + Psyr_4609 0.52 -2.0 5,467,270 - Psyr_4609 0.52 +0.2 5,467,270 - Psyr_4609 0.52 -3.3 5,467,270 - Psyr_4609 0.52 -1.7 5,467,270 - Psyr_4609 0.52 -0.4 5,467,270 - Psyr_4609 0.52 +1.0 5,467,270 - Psyr_4609 0.52 +0.7 5,467,270 - Psyr_4609 0.52 -1.0 5,467,283 - Psyr_4609 0.53 -0.6 5,467,299 + Psyr_4609 0.54 +0.0 5,467,435 - Psyr_4609 0.63 -0.7 5,467,587 + Psyr_4609 0.74 -1.8 5,467,588 - Psyr_4609 0.74 -0.8 5,467,588 - Psyr_4609 0.74 +0.1 5,467,665 + Psyr_4609 0.79 -1.8 5,467,845 + -0.6 5,467,845 + +0.6 5,467,845 + -0.1 5,467,845 + -0.6 5,467,845 + +1.2 5,467,845 + -0.0 5,467,846 - +0.6 5,467,875 + -0.6 5,467,876 - +0.2 5,467,935 + +0.2 5,467,936 - -1.0 5,467,936 - +0.1 5,468,011 - +0.4 5,468,011 - +0.4 5,468,157 + Psyr_4610 0.14 -0.3 5,468,157 + Psyr_4610 0.14 +1.0 5,468,157 + Psyr_4610 0.14 +0.3 5,468,157 + Psyr_4610 0.14 -0.7 5,468,157 + Psyr_4610 0.14 -1.3 5,468,158 - Psyr_4610 0.14 -2.3 5,468,158 - Psyr_4610 0.14 -0.8 5,468,158 - Psyr_4610 0.14 -0.9 5,468,158 - Psyr_4610 0.14 -0.3 5,468,254 + Psyr_4610 0.25 -1.1 5,468,255 - Psyr_4610 0.26 +1.3 5,468,261 - Psyr_4610 0.26 -1.3 5,468,588 - Psyr_4610 0.66 +1.0 5,469,574 + -0.2 5,469,575 - +3.0 5,469,575 - +1.2 5,469,705 + -1.0 5,469,705 + -0.2 5,469,705 + +0.3 5,469,705 + -1.1 5,469,705 + -0.7 5,469,706 - +0.7 5,469,706 - -0.7 5,469,706 - +0.3 5,469,706 - -0.1
Or see this region's nucleotide sequence