Experiment: KB with Acriflavine 7.75 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4449 and Psyr_4450 are separated by 223 nucleotides Psyr_4450 and Psyr_4451 are separated by 236 nucleotides Psyr_4451 and Psyr_4452 overlap by 4 nucleotides
Psyr_4449: Psyr_4449 - AsmA, at 5,314,087 to 5,316,153
_4449
Psyr_4450: Psyr_4450 - transcriptional regulator, TetR family, at 5,316,377 to 5,317,009
_4450
Psyr_4451: Psyr_4451 - UreE urease accessory, N-terminal:UreE urease accessory, C-terminal, at 5,317,246 to 5,317,746
_4451
Psyr_4452: Psyr_4452 - Urease accessory protein UreF, at 5,317,743 to 5,318,417
_4452
Position (kb) 5316
5317
5318 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5315.507 kb on + strand, within Psyr_4449 at 5315.508 kb on - strand, within Psyr_4449 at 5315.508 kb on - strand, within Psyr_4449 at 5315.802 kb on + strand, within Psyr_4449 at 5316.091 kb on + strand at 5316.092 kb on - strand at 5316.092 kb on - strand at 5316.092 kb on - strand at 5316.092 kb on - strand at 5316.093 kb on + strand at 5316.093 kb on + strand at 5316.093 kb on + strand at 5316.093 kb on + strand at 5316.093 kb on + strand at 5316.094 kb on - strand at 5316.094 kb on - strand at 5316.094 kb on - strand at 5316.094 kb on - strand at 5316.198 kb on + strand at 5316.209 kb on + strand at 5316.209 kb on + strand at 5316.209 kb on + strand at 5316.280 kb on + strand at 5316.280 kb on + strand at 5316.280 kb on + strand at 5316.281 kb on - strand at 5316.281 kb on - strand at 5316.283 kb on + strand at 5316.283 kb on + strand at 5316.325 kb on - strand at 5316.325 kb on - strand at 5316.339 kb on - strand at 5316.339 kb on - strand at 5316.356 kb on - strand at 5316.356 kb on - strand at 5316.356 kb on - strand at 5316.657 kb on + strand, within Psyr_4450 at 5316.657 kb on + strand, within Psyr_4450 at 5316.657 kb on + strand, within Psyr_4450 at 5316.658 kb on - strand, within Psyr_4450 at 5316.658 kb on - strand, within Psyr_4450 at 5316.658 kb on - strand, within Psyr_4450 at 5316.658 kb on - strand, within Psyr_4450 at 5316.716 kb on + strand, within Psyr_4450 at 5316.717 kb on - strand, within Psyr_4450 at 5317.024 kb on + strand at 5317.025 kb on - strand at 5317.055 kb on - strand at 5317.063 kb on + strand at 5317.064 kb on - strand at 5317.092 kb on + strand at 5317.093 kb on - strand at 5317.119 kb on - strand at 5317.119 kb on - strand at 5317.179 kb on - strand at 5317.240 kb on + strand at 5317.240 kb on + strand at 5317.240 kb on + strand at 5317.240 kb on + strand at 5317.240 kb on + strand at 5317.241 kb on - strand at 5317.241 kb on - strand at 5317.241 kb on - strand at 5317.241 kb on - strand at 5317.514 kb on - strand, within Psyr_4451 at 5317.579 kb on + strand, within Psyr_4451 at 5317.579 kb on + strand, within Psyr_4451 at 5317.579 kb on + strand, within Psyr_4451 at 5317.579 kb on + strand, within Psyr_4451 at 5317.580 kb on - strand, within Psyr_4451 at 5317.580 kb on - strand, within Psyr_4451 at 5317.709 kb on - strand at 5317.800 kb on + strand at 5317.807 kb on - strand at 5317.807 kb on - strand at 5317.807 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acriflavine 7.75 ug/ml remove 5,315,507 + Psyr_4449 0.69 +0.4 5,315,508 - Psyr_4449 0.69 +0.1 5,315,508 - Psyr_4449 0.69 +1.0 5,315,802 + Psyr_4449 0.83 -0.0 5,316,091 + +0.9 5,316,092 - -0.0 5,316,092 - +0.5 5,316,092 - +0.3 5,316,092 - -0.1 5,316,093 + +1.1 5,316,093 + -0.8 5,316,093 + -0.8 5,316,093 + +1.0 5,316,093 + +0.0 5,316,094 - -2.0 5,316,094 - +0.4 5,316,094 - +0.4 5,316,094 - +1.4 5,316,198 + +1.0 5,316,209 + +0.6 5,316,209 + +0.7 5,316,209 + -0.2 5,316,280 + +0.3 5,316,280 + -0.0 5,316,280 + -0.7 5,316,281 - -0.3 5,316,281 - +0.3 5,316,283 + +0.7 5,316,283 + -0.5 5,316,325 - -0.0 5,316,325 - +0.6 5,316,339 - -0.0 5,316,339 - +0.4 5,316,356 - -0.0 5,316,356 - -2.5 5,316,356 - -1.6 5,316,657 + Psyr_4450 0.44 -0.9 5,316,657 + Psyr_4450 0.44 -1.1 5,316,657 + Psyr_4450 0.44 +1.4 5,316,658 - Psyr_4450 0.44 -1.1 5,316,658 - Psyr_4450 0.44 +1.0 5,316,658 - Psyr_4450 0.44 -0.7 5,316,658 - Psyr_4450 0.44 -0.2 5,316,716 + Psyr_4450 0.54 -0.5 5,316,717 - Psyr_4450 0.54 -0.7 5,317,024 + -0.4 5,317,025 - +0.4 5,317,055 - -1.0 5,317,063 + +0.2 5,317,064 - -0.7 5,317,092 + -0.8 5,317,093 - -0.6 5,317,119 - +0.7 5,317,119 - +1.0 5,317,179 - +0.1 5,317,240 + +0.3 5,317,240 + -1.6 5,317,240 + +0.3 5,317,240 + +0.7 5,317,240 + +1.6 5,317,241 - +0.7 5,317,241 - +0.6 5,317,241 - -0.6 5,317,241 - -0.4 5,317,514 - Psyr_4451 0.53 -0.6 5,317,579 + Psyr_4451 0.66 -0.3 5,317,579 + Psyr_4451 0.66 +2.0 5,317,579 + Psyr_4451 0.66 -0.6 5,317,579 + Psyr_4451 0.66 -0.3 5,317,580 - Psyr_4451 0.67 -0.8 5,317,580 - Psyr_4451 0.67 -0.4 5,317,709 - -0.1 5,317,800 + +0.6 5,317,807 - +0.1 5,317,807 - -0.6 5,317,807 - +0.6
Or see this region's nucleotide sequence