Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4407

Experiment: KB with Acriflavine 7.75 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4406 and Psyr_4407 are separated by 172 nucleotidesPsyr_4407 and Psyr_4408 are separated by 91 nucleotides Psyr_4406: Psyr_4406 - IMP cyclohydrolase / phosphoribosylaminoimidazolecarboxamide formyltransferase, at 5,267,706 to 5,269,322 _4406 Psyr_4407: Psyr_4407 - phosphoribosylamine--glycine ligase, at 5,269,495 to 5,270,790 _4407 Psyr_4408: Psyr_4408 - Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase, at 5,270,882 to 5,273,671 _4408 Position (kb) 5269 5270 5271Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5269.386 kb on + strandat 5269.391 kb on + strandat 5269.391 kb on + strandat 5269.391 kb on + strandat 5269.391 kb on + strandat 5269.391 kb on + strandat 5269.395 kb on - strandat 5269.415 kb on + strandat 5269.415 kb on + strandat 5269.457 kb on + strandat 5269.457 kb on + strandat 5269.458 kb on - strandat 5269.471 kb on + strandat 5269.471 kb on + strandat 5269.471 kb on + strandat 5269.471 kb on + strandat 5269.471 kb on + strandat 5269.471 kb on + strandat 5269.471 kb on + strandat 5269.471 kb on + strandat 5269.472 kb on - strandat 5269.472 kb on - strandat 5269.472 kb on - strandat 5269.472 kb on - strandat 5269.475 kb on + strandat 5269.476 kb on - strandat 5270.108 kb on + strand, within Psyr_4407at 5270.109 kb on - strand, within Psyr_4407at 5270.188 kb on + strand, within Psyr_4407at 5270.287 kb on + strand, within Psyr_4407at 5270.524 kb on + strand, within Psyr_4407at 5270.639 kb on + strand, within Psyr_4407at 5270.639 kb on + strand, within Psyr_4407at 5270.639 kb on + strand, within Psyr_4407at 5270.905 kb on - strandat 5271.096 kb on + strandat 5271.096 kb on + strandat 5271.179 kb on + strand, within Psyr_4408at 5271.179 kb on + strand, within Psyr_4408at 5271.179 kb on + strand, within Psyr_4408at 5271.179 kb on + strand, within Psyr_4408at 5271.179 kb on + strand, within Psyr_4408at 5271.179 kb on + strand, within Psyr_4408at 5271.179 kb on + strand, within Psyr_4408at 5271.179 kb on + strand, within Psyr_4408at 5271.179 kb on + strand, within Psyr_4408at 5271.179 kb on + strand, within Psyr_4408at 5271.179 kb on + strand, within Psyr_4408at 5271.179 kb on + strand, within Psyr_4408at 5271.179 kb on + strand, within Psyr_4408at 5271.179 kb on + strand, within Psyr_4408at 5271.179 kb on + strand, within Psyr_4408at 5271.179 kb on + strand, within Psyr_4408at 5271.179 kb on + strand, within Psyr_4408at 5271.179 kb on + strand, within Psyr_4408at 5271.180 kb on - strand, within Psyr_4408at 5271.180 kb on - strand, within Psyr_4408at 5271.180 kb on - strand, within Psyr_4408at 5271.180 kb on - strand, within Psyr_4408at 5271.180 kb on - strand, within Psyr_4408at 5271.180 kb on - strand, within Psyr_4408at 5271.180 kb on - strand, within Psyr_4408at 5271.180 kb on - strand, within Psyr_4408at 5271.180 kb on - strand, within Psyr_4408at 5271.180 kb on - strand, within Psyr_4408at 5271.180 kb on - strand, within Psyr_4408at 5271.180 kb on - strand, within Psyr_4408at 5271.180 kb on - strand, within Psyr_4408at 5271.180 kb on - strand, within Psyr_4408at 5271.180 kb on - strand, within Psyr_4408at 5271.180 kb on - strand, within Psyr_4408at 5271.180 kb on - strand, within Psyr_4408at 5271.213 kb on + strand, within Psyr_4408at 5271.214 kb on - strand, within Psyr_4408at 5271.214 kb on - strand, within Psyr_4408at 5271.214 kb on - strand, within Psyr_4408at 5271.231 kb on + strand, within Psyr_4408at 5271.304 kb on + strand, within Psyr_4408at 5271.307 kb on - strand, within Psyr_4408at 5271.309 kb on - strand, within Psyr_4408at 5271.508 kb on - strand, within Psyr_4408at 5271.626 kb on + strand, within Psyr_4408at 5271.626 kb on + strand, within Psyr_4408at 5271.627 kb on - strand, within Psyr_4408at 5271.632 kb on + strand, within Psyr_4408

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acriflavine 7.75 ug/ml
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5,269,386 + +0.5
5,269,391 + +0.7
5,269,391 + -0.2
5,269,391 + +0.3
5,269,391 + -0.3
5,269,391 + +1.0
5,269,395 - -0.5
5,269,415 + -0.4
5,269,415 + +0.1
5,269,457 + -0.6
5,269,457 + +1.0
5,269,458 - +0.1
5,269,471 + +1.8
5,269,471 + +0.2
5,269,471 + -2.5
5,269,471 + -1.0
5,269,471 + +2.5
5,269,471 + +1.7
5,269,471 + +1.5
5,269,471 + +0.7
5,269,472 - +0.7
5,269,472 - +0.5
5,269,472 - -1.0
5,269,472 - +2.0
5,269,475 + -0.4
5,269,476 - -0.3
5,270,108 + Psyr_4407 0.47 -2.7
5,270,109 - Psyr_4407 0.47 -0.6
5,270,188 + Psyr_4407 0.53 -0.3
5,270,287 + Psyr_4407 0.61 -0.9
5,270,524 + Psyr_4407 0.79 -0.0
5,270,639 + Psyr_4407 0.88 -0.4
5,270,639 + Psyr_4407 0.88 -1.0
5,270,639 + Psyr_4407 0.88 -0.6
5,270,905 - -0.0
5,271,096 + -0.4
5,271,096 + -0.6
5,271,179 + Psyr_4408 0.11 +0.2
5,271,179 + Psyr_4408 0.11 -0.0
5,271,179 + Psyr_4408 0.11 -0.0
5,271,179 + Psyr_4408 0.11 +0.3
5,271,179 + Psyr_4408 0.11 +0.5
5,271,179 + Psyr_4408 0.11 -1.6
5,271,179 + Psyr_4408 0.11 +1.1
5,271,179 + Psyr_4408 0.11 +0.4
5,271,179 + Psyr_4408 0.11 +0.1
5,271,179 + Psyr_4408 0.11 +1.2
5,271,179 + Psyr_4408 0.11 +1.4
5,271,179 + Psyr_4408 0.11 -1.0
5,271,179 + Psyr_4408 0.11 +1.0
5,271,179 + Psyr_4408 0.11 -0.6
5,271,179 + Psyr_4408 0.11 +2.3
5,271,179 + Psyr_4408 0.11 -0.5
5,271,179 + Psyr_4408 0.11 +0.4
5,271,179 + Psyr_4408 0.11 +0.6
5,271,180 - Psyr_4408 0.11 +0.5
5,271,180 - Psyr_4408 0.11 -1.9
5,271,180 - Psyr_4408 0.11 -1.9
5,271,180 - Psyr_4408 0.11 +0.5
5,271,180 - Psyr_4408 0.11 +0.2
5,271,180 - Psyr_4408 0.11 +1.0
5,271,180 - Psyr_4408 0.11 -0.0
5,271,180 - Psyr_4408 0.11 -0.4
5,271,180 - Psyr_4408 0.11 +0.2
5,271,180 - Psyr_4408 0.11 +0.5
5,271,180 - Psyr_4408 0.11 +1.2
5,271,180 - Psyr_4408 0.11 +2.0
5,271,180 - Psyr_4408 0.11 +0.4
5,271,180 - Psyr_4408 0.11 -1.6
5,271,180 - Psyr_4408 0.11 +0.5
5,271,180 - Psyr_4408 0.11 +0.6
5,271,180 - Psyr_4408 0.11 -0.0
5,271,213 + Psyr_4408 0.12 -0.6
5,271,214 - Psyr_4408 0.12 +1.0
5,271,214 - Psyr_4408 0.12 -0.4
5,271,214 - Psyr_4408 0.12 -0.0
5,271,231 + Psyr_4408 0.13 -0.5
5,271,304 + Psyr_4408 0.15 +3.0
5,271,307 - Psyr_4408 0.15 -1.0
5,271,309 - Psyr_4408 0.15 +0.2
5,271,508 - Psyr_4408 0.22 +0.5
5,271,626 + Psyr_4408 0.27 -0.0
5,271,626 + Psyr_4408 0.27 -0.6
5,271,627 - Psyr_4408 0.27 +0.6
5,271,632 + Psyr_4408 0.27 +0.4

Or see this region's nucleotide sequence