Experiment: KB with Acriflavine 7.75 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4166 and Psyr_4167 are separated by 309 nucleotides Psyr_4167 and Psyr_4168 are separated by 78 nucleotides
Psyr_4166: Psyr_4166 - aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, at 4,955,603 to 4,957,048
_4166
Psyr_4167: Psyr_4167 - Rare lipoprotein A, at 4,957,358 to 4,957,795
_4167
Psyr_4168: Psyr_4168 - K+-dependent Na+/Ca+ exchanger related-protein, at 4,957,874 to 4,958,905
_4168
Position (kb) 4957
4958 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4957.088 kb on - strand at 4957.088 kb on - strand at 4957.089 kb on + strand at 4957.089 kb on + strand at 4957.089 kb on + strand at 4957.089 kb on + strand at 4957.089 kb on + strand at 4957.089 kb on + strand at 4957.090 kb on - strand at 4957.090 kb on - strand at 4957.090 kb on - strand at 4957.090 kb on - strand at 4957.142 kb on - strand at 4957.257 kb on + strand at 4957.257 kb on + strand at 4957.257 kb on + strand at 4957.257 kb on + strand at 4957.258 kb on - strand at 4957.258 kb on - strand at 4957.258 kb on - strand at 4957.258 kb on - strand at 4957.258 kb on - strand at 4957.259 kb on + strand at 4957.401 kb on + strand at 4957.401 kb on + strand at 4957.401 kb on + strand at 4957.402 kb on - strand, within Psyr_4167 at 4957.402 kb on - strand, within Psyr_4167 at 4957.439 kb on - strand, within Psyr_4167 at 4957.465 kb on - strand, within Psyr_4167 at 4957.505 kb on + strand, within Psyr_4167 at 4957.529 kb on + strand, within Psyr_4167 at 4957.530 kb on - strand, within Psyr_4167 at 4957.532 kb on + strand, within Psyr_4167 at 4957.831 kb on + strand at 4957.831 kb on + strand at 4957.832 kb on - strand at 4957.890 kb on + strand at 4957.890 kb on + strand at 4957.891 kb on - strand at 4957.891 kb on - strand at 4958.019 kb on + strand, within Psyr_4168 at 4958.020 kb on - strand, within Psyr_4168 at 4958.020 kb on - strand, within Psyr_4168 at 4958.094 kb on + strand, within Psyr_4168 at 4958.094 kb on + strand, within Psyr_4168 at 4958.095 kb on - strand, within Psyr_4168 at 4958.095 kb on - strand, within Psyr_4168 at 4958.095 kb on - strand, within Psyr_4168 at 4958.095 kb on - strand, within Psyr_4168 at 4958.095 kb on - strand, within Psyr_4168 at 4958.095 kb on - strand, within Psyr_4168 at 4958.095 kb on - strand, within Psyr_4168 at 4958.341 kb on + strand, within Psyr_4168 at 4958.353 kb on + strand, within Psyr_4168 at 4958.467 kb on + strand, within Psyr_4168 at 4958.705 kb on + strand, within Psyr_4168 at 4958.706 kb on - strand, within Psyr_4168 at 4958.706 kb on - strand, within Psyr_4168 at 4958.757 kb on - strand, within Psyr_4168 at 4958.766 kb on - strand, within Psyr_4168 at 4958.766 kb on - strand, within Psyr_4168 at 4958.766 kb on - strand, within Psyr_4168
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acriflavine 7.75 ug/ml remove 4,957,088 - -0.1 4,957,088 - -2.8 4,957,089 + +0.4 4,957,089 + -0.8 4,957,089 + -1.3 4,957,089 + -1.0 4,957,089 + -0.4 4,957,089 + -1.0 4,957,090 - -0.0 4,957,090 - +0.2 4,957,090 - -0.8 4,957,090 - -0.6 4,957,142 - +1.2 4,957,257 + -0.1 4,957,257 + +0.5 4,957,257 + -1.3 4,957,257 + -1.2 4,957,258 - -0.3 4,957,258 - -0.5 4,957,258 - -0.6 4,957,258 - +1.3 4,957,258 - -0.4 4,957,259 + +0.7 4,957,401 + +0.6 4,957,401 + +1.6 4,957,401 + -0.9 4,957,402 - Psyr_4167 0.10 -0.4 4,957,402 - Psyr_4167 0.10 +0.8 4,957,439 - Psyr_4167 0.18 -1.3 4,957,465 - Psyr_4167 0.24 -2.0 4,957,505 + Psyr_4167 0.34 -1.1 4,957,529 + Psyr_4167 0.39 -1.6 4,957,530 - Psyr_4167 0.39 -0.4 4,957,532 + Psyr_4167 0.40 -0.0 4,957,831 + +1.2 4,957,831 + +0.4 4,957,832 - -0.2 4,957,890 + +0.4 4,957,890 + -0.0 4,957,891 - +0.8 4,957,891 - -1.6 4,958,019 + Psyr_4168 0.14 +0.2 4,958,020 - Psyr_4168 0.14 +0.8 4,958,020 - Psyr_4168 0.14 -0.8 4,958,094 + Psyr_4168 0.21 +0.4 4,958,094 + Psyr_4168 0.21 +2.1 4,958,095 - Psyr_4168 0.21 +0.3 4,958,095 - Psyr_4168 0.21 +0.7 4,958,095 - Psyr_4168 0.21 -0.4 4,958,095 - Psyr_4168 0.21 -1.9 4,958,095 - Psyr_4168 0.21 -1.8 4,958,095 - Psyr_4168 0.21 -0.0 4,958,095 - Psyr_4168 0.21 -0.7 4,958,341 + Psyr_4168 0.45 -1.2 4,958,353 + Psyr_4168 0.46 -0.2 4,958,467 + Psyr_4168 0.57 +1.0 4,958,705 + Psyr_4168 0.81 +0.2 4,958,706 - Psyr_4168 0.81 -0.3 4,958,706 - Psyr_4168 0.81 -0.5 4,958,757 - Psyr_4168 0.86 +0.8 4,958,766 - Psyr_4168 0.86 +0.7 4,958,766 - Psyr_4168 0.86 -1.9 4,958,766 - Psyr_4168 0.86 -1.6
Or see this region's nucleotide sequence