Experiment: KB with Acriflavine 7.75 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3480 and Psyr_3481 are separated by 3 nucleotides Psyr_3481 and Psyr_3482 are separated by 278 nucleotides Psyr_3482 and Psyr_3483 are separated by 10 nucleotides Psyr_3483 and Psyr_3484 are separated by 73 nucleotides
Psyr_3480: Psyr_3480 - Flagellar basal-body rod protein FlgC, at 4,151,693 to 4,152,133
_3480
Psyr_3481: Psyr_3481 - Flagellar basal-body rod protein FlgB, at 4,152,137 to 4,152,544
_3481
Psyr_3482: Psyr_3482 - Protein of unknown function DUF1348, at 4,152,823 to 4,153,296
_3482
Psyr_3483: Psyr_3483 - Cyanase, at 4,153,307 to 4,153,774
_3483
Psyr_3484: Psyr_3484 - regulatory protein, LysR:LysR, substrate-binding protein, at 4,153,848 to 4,154,762
_3484
Position (kb) 4152
4153
4154 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4151.823 kb on + strand, within Psyr_3480 at 4151.824 kb on - strand, within Psyr_3480 at 4151.824 kb on - strand, within Psyr_3480 at 4151.824 kb on - strand, within Psyr_3480 at 4151.824 kb on - strand, within Psyr_3480 at 4151.829 kb on + strand, within Psyr_3480 at 4151.829 kb on + strand, within Psyr_3480 at 4152.056 kb on - strand, within Psyr_3480 at 4152.138 kb on + strand at 4152.225 kb on + strand, within Psyr_3481 at 4152.225 kb on + strand, within Psyr_3481 at 4152.225 kb on + strand, within Psyr_3481 at 4152.225 kb on + strand, within Psyr_3481 at 4152.225 kb on + strand, within Psyr_3481 at 4152.226 kb on - strand, within Psyr_3481 at 4152.226 kb on - strand, within Psyr_3481 at 4152.291 kb on + strand, within Psyr_3481 at 4152.291 kb on + strand, within Psyr_3481 at 4152.292 kb on - strand, within Psyr_3481 at 4152.292 kb on - strand, within Psyr_3481 at 4152.292 kb on - strand, within Psyr_3481 at 4152.332 kb on + strand, within Psyr_3481 at 4152.512 kb on + strand at 4152.512 kb on + strand at 4152.512 kb on + strand at 4152.512 kb on + strand at 4152.512 kb on + strand at 4152.512 kb on + strand at 4152.512 kb on + strand at 4152.512 kb on + strand at 4152.512 kb on + strand at 4152.512 kb on + strand at 4152.512 kb on + strand at 4152.512 kb on + strand at 4152.512 kb on + strand at 4152.512 kb on + strand at 4152.512 kb on + strand at 4152.512 kb on + strand at 4152.512 kb on + strand at 4152.513 kb on - strand at 4152.513 kb on - strand at 4152.513 kb on - strand at 4152.513 kb on - strand at 4152.513 kb on - strand at 4152.513 kb on - strand at 4152.513 kb on - strand at 4152.513 kb on - strand at 4152.513 kb on - strand at 4152.513 kb on - strand at 4152.513 kb on - strand at 4152.513 kb on - strand at 4152.513 kb on - strand at 4152.513 kb on - strand at 4152.513 kb on - strand at 4152.884 kb on + strand, within Psyr_3482 at 4152.884 kb on + strand, within Psyr_3482 at 4152.885 kb on - strand, within Psyr_3482 at 4152.885 kb on - strand, within Psyr_3482 at 4152.980 kb on + strand, within Psyr_3482 at 4153.025 kb on + strand, within Psyr_3482 at 4153.093 kb on - strand, within Psyr_3482 at 4153.163 kb on + strand, within Psyr_3482 at 4153.163 kb on + strand, within Psyr_3482 at 4153.163 kb on + strand, within Psyr_3482 at 4153.163 kb on + strand, within Psyr_3482 at 4153.163 kb on + strand, within Psyr_3482 at 4153.178 kb on + strand, within Psyr_3482 at 4153.178 kb on + strand, within Psyr_3482 at 4153.178 kb on + strand, within Psyr_3482 at 4153.468 kb on - strand, within Psyr_3483 at 4153.495 kb on - strand, within Psyr_3483 at 4153.495 kb on - strand, within Psyr_3483 at 4153.650 kb on + strand, within Psyr_3483 at 4153.650 kb on + strand, within Psyr_3483 at 4153.650 kb on + strand, within Psyr_3483 at 4153.650 kb on + strand, within Psyr_3483 at 4153.650 kb on + strand, within Psyr_3483 at 4153.650 kb on + strand, within Psyr_3483 at 4153.650 kb on + strand, within Psyr_3483 at 4153.650 kb on + strand, within Psyr_3483 at 4153.650 kb on + strand, within Psyr_3483 at 4153.650 kb on + strand, within Psyr_3483 at 4153.650 kb on + strand, within Psyr_3483 at 4153.651 kb on - strand, within Psyr_3483 at 4153.651 kb on - strand, within Psyr_3483 at 4153.651 kb on - strand, within Psyr_3483 at 4153.651 kb on - strand, within Psyr_3483 at 4153.651 kb on - strand, within Psyr_3483 at 4153.651 kb on - strand, within Psyr_3483 at 4153.651 kb on - strand, within Psyr_3483 at 4153.651 kb on - strand, within Psyr_3483 at 4153.651 kb on - strand, within Psyr_3483 at 4153.651 kb on - strand, within Psyr_3483 at 4153.651 kb on - strand, within Psyr_3483 at 4153.651 kb on - strand, within Psyr_3483 at 4153.651 kb on - strand, within Psyr_3483 at 4153.651 kb on - strand, within Psyr_3483 at 4153.759 kb on + strand at 4153.759 kb on + strand at 4153.759 kb on + strand at 4153.760 kb on - strand at 4153.760 kb on - strand at 4153.760 kb on - strand at 4153.760 kb on - strand at 4153.775 kb on - strand at 4153.775 kb on - strand at 4153.775 kb on - strand at 4153.775 kb on - strand at 4153.779 kb on - strand at 4153.779 kb on - strand at 4153.822 kb on - strand at 4153.829 kb on + strand at 4153.847 kb on + strand at 4153.873 kb on - strand at 4153.899 kb on - strand at 4153.899 kb on - strand at 4153.900 kb on + strand at 4153.900 kb on + strand at 4153.900 kb on + strand at 4153.900 kb on + strand at 4153.900 kb on + strand at 4153.900 kb on + strand at 4153.900 kb on + strand at 4153.900 kb on + strand at 4153.900 kb on + strand at 4153.900 kb on + strand at 4153.900 kb on + strand at 4153.900 kb on + strand at 4153.900 kb on + strand at 4153.900 kb on + strand at 4153.900 kb on + strand at 4153.900 kb on + strand at 4153.900 kb on + strand at 4153.900 kb on + strand at 4153.900 kb on + strand at 4153.900 kb on + strand at 4153.900 kb on + strand at 4153.900 kb on + strand at 4153.900 kb on + strand at 4153.901 kb on - strand at 4153.901 kb on - strand at 4153.901 kb on - strand at 4153.901 kb on - strand at 4153.901 kb on - strand at 4153.901 kb on - strand at 4153.901 kb on - strand at 4153.901 kb on - strand at 4153.901 kb on - strand at 4153.901 kb on - strand at 4153.901 kb on - strand at 4153.901 kb on - strand at 4153.901 kb on - strand at 4153.901 kb on - strand at 4153.901 kb on - strand at 4153.901 kb on - strand at 4153.901 kb on - strand at 4153.901 kb on - strand at 4153.901 kb on - strand at 4153.901 kb on - strand at 4153.901 kb on - strand at 4153.905 kb on + strand at 4153.905 kb on + strand at 4153.905 kb on + strand at 4154.073 kb on + strand, within Psyr_3484 at 4154.073 kb on + strand, within Psyr_3484 at 4154.074 kb on - strand, within Psyr_3484 at 4154.074 kb on - strand, within Psyr_3484 at 4154.180 kb on + strand, within Psyr_3484 at 4154.194 kb on - strand, within Psyr_3484
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acriflavine 7.75 ug/ml remove 4,151,823 + Psyr_3480 0.29 +0.1 4,151,824 - Psyr_3480 0.30 +1.0 4,151,824 - Psyr_3480 0.30 +1.2 4,151,824 - Psyr_3480 0.30 +2.1 4,151,824 - Psyr_3480 0.30 -0.0 4,151,829 + Psyr_3480 0.31 -0.5 4,151,829 + Psyr_3480 0.31 +0.4 4,152,056 - Psyr_3480 0.82 -0.4 4,152,138 + -0.6 4,152,225 + Psyr_3481 0.22 +0.0 4,152,225 + Psyr_3481 0.22 -0.8 4,152,225 + Psyr_3481 0.22 +1.0 4,152,225 + Psyr_3481 0.22 +0.6 4,152,225 + Psyr_3481 0.22 -0.4 4,152,226 - Psyr_3481 0.22 -0.2 4,152,226 - Psyr_3481 0.22 -0.4 4,152,291 + Psyr_3481 0.38 -0.2 4,152,291 + Psyr_3481 0.38 -1.2 4,152,292 - Psyr_3481 0.38 -0.3 4,152,292 - Psyr_3481 0.38 +1.2 4,152,292 - Psyr_3481 0.38 +0.6 4,152,332 + Psyr_3481 0.48 +1.5 4,152,512 + -0.0 4,152,512 + +0.5 4,152,512 + +0.6 4,152,512 + +0.8 4,152,512 + +0.7 4,152,512 + +0.2 4,152,512 + -1.3 4,152,512 + +0.8 4,152,512 + -0.1 4,152,512 + -0.2 4,152,512 + -2.0 4,152,512 + +0.9 4,152,512 + +0.6 4,152,512 + +0.2 4,152,512 + -2.0 4,152,512 + +1.8 4,152,512 + +0.2 4,152,513 - -0.4 4,152,513 - +1.0 4,152,513 - -1.0 4,152,513 - +0.3 4,152,513 - -0.2 4,152,513 - +1.1 4,152,513 - +0.8 4,152,513 - -0.8 4,152,513 - +2.8 4,152,513 - +1.6 4,152,513 - -0.3 4,152,513 - -0.1 4,152,513 - -0.2 4,152,513 - +0.0 4,152,513 - +0.8 4,152,884 + Psyr_3482 0.13 -0.8 4,152,884 + Psyr_3482 0.13 -0.6 4,152,885 - Psyr_3482 0.13 -1.5 4,152,885 - Psyr_3482 0.13 -0.2 4,152,980 + Psyr_3482 0.33 +0.2 4,153,025 + Psyr_3482 0.43 -1.4 4,153,093 - Psyr_3482 0.57 -2.4 4,153,163 + Psyr_3482 0.72 +1.8 4,153,163 + Psyr_3482 0.72 -0.1 4,153,163 + Psyr_3482 0.72 -0.8 4,153,163 + Psyr_3482 0.72 +0.4 4,153,163 + Psyr_3482 0.72 -0.5 4,153,178 + Psyr_3482 0.75 -0.2 4,153,178 + Psyr_3482 0.75 -0.2 4,153,178 + Psyr_3482 0.75 -1.5 4,153,468 - Psyr_3483 0.34 +1.0 4,153,495 - Psyr_3483 0.40 -0.2 4,153,495 - Psyr_3483 0.40 +0.1 4,153,650 + Psyr_3483 0.73 -0.8 4,153,650 + Psyr_3483 0.73 +2.2 4,153,650 + Psyr_3483 0.73 -1.8 4,153,650 + Psyr_3483 0.73 +0.9 4,153,650 + Psyr_3483 0.73 -0.1 4,153,650 + Psyr_3483 0.73 +0.8 4,153,650 + Psyr_3483 0.73 -0.2 4,153,650 + Psyr_3483 0.73 -0.3 4,153,650 + Psyr_3483 0.73 -3.3 4,153,650 + Psyr_3483 0.73 +0.6 4,153,650 + Psyr_3483 0.73 -0.2 4,153,651 - Psyr_3483 0.74 -0.9 4,153,651 - Psyr_3483 0.74 +0.2 4,153,651 - Psyr_3483 0.74 +0.1 4,153,651 - Psyr_3483 0.74 +1.2 4,153,651 - Psyr_3483 0.74 +1.8 4,153,651 - Psyr_3483 0.74 +1.1 4,153,651 - Psyr_3483 0.74 +0.7 4,153,651 - Psyr_3483 0.74 -1.3 4,153,651 - Psyr_3483 0.74 +0.6 4,153,651 - Psyr_3483 0.74 -0.5 4,153,651 - Psyr_3483 0.74 -0.0 4,153,651 - Psyr_3483 0.74 +0.7 4,153,651 - Psyr_3483 0.74 +2.8 4,153,651 - Psyr_3483 0.74 +0.0 4,153,759 + -0.1 4,153,759 + -1.5 4,153,759 + +0.2 4,153,760 - -1.3 4,153,760 - +0.5 4,153,760 - +0.1 4,153,760 - -0.5 4,153,775 - -0.5 4,153,775 - +2.3 4,153,775 - +0.2 4,153,775 - -0.3 4,153,779 - -0.2 4,153,779 - +1.0 4,153,822 - -0.5 4,153,829 + +0.4 4,153,847 + -0.9 4,153,873 - +0.7 4,153,899 - -0.8 4,153,899 - -0.9 4,153,900 + +0.3 4,153,900 + +0.2 4,153,900 + -0.0 4,153,900 + +0.8 4,153,900 + -0.9 4,153,900 + -0.3 4,153,900 + -0.5 4,153,900 + +1.8 4,153,900 + +0.7 4,153,900 + +0.3 4,153,900 + -0.5 4,153,900 + +0.3 4,153,900 + -0.1 4,153,900 + +0.6 4,153,900 + -0.5 4,153,900 + +0.2 4,153,900 + +0.8 4,153,900 + +0.1 4,153,900 + -2.0 4,153,900 + -1.6 4,153,900 + +2.0 4,153,900 + +0.7 4,153,900 + +0.4 4,153,901 - +0.8 4,153,901 - -0.7 4,153,901 - +0.5 4,153,901 - +0.8 4,153,901 - -0.6 4,153,901 - -0.3 4,153,901 - +0.4 4,153,901 - +1.4 4,153,901 - -0.5 4,153,901 - +1.2 4,153,901 - +0.1 4,153,901 - -0.2 4,153,901 - -1.8 4,153,901 - +1.2 4,153,901 - +1.2 4,153,901 - -0.8 4,153,901 - +0.7 4,153,901 - -1.8 4,153,901 - -0.5 4,153,901 - -0.5 4,153,901 - -0.2 4,153,905 + +1.2 4,153,905 + +1.1 4,153,905 + +0.4 4,154,073 + Psyr_3484 0.25 +1.0 4,154,073 + Psyr_3484 0.25 +0.2 4,154,074 - Psyr_3484 0.25 +1.3 4,154,074 - Psyr_3484 0.25 +0.3 4,154,180 + Psyr_3484 0.36 +0.4 4,154,194 - Psyr_3484 0.38 +0.8
Or see this region's nucleotide sequence