Experiment: KB with Acriflavine 7.75 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3281 and Psyr_3282 are separated by 125 nucleotides Psyr_3282 and Psyr_3283 are separated by 256 nucleotides Psyr_3283 and Psyr_3284 are separated by 9 nucleotides
Psyr_3281: Psyr_3281 - Glycoside hydrolase, family 3, N-terminal, at 3,928,376 to 3,929,386
_3281
Psyr_3282: Psyr_3282 - transcriptional regulator, TetR family, at 3,929,512 to 3,930,228
_3282
Psyr_3283: Psyr_3283 - SOS-response transcriptional repressor, LexA, at 3,930,485 to 3,931,093
_3283
Psyr_3284: Psyr_3284 - SOS cell division inhibitor SulA, at 3,931,103 to 3,931,573
_3284
Position (kb) 3929
3930
3931 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 3928.741 kb on - strand, within Psyr_3281 at 3928.909 kb on + strand, within Psyr_3281 at 3929.147 kb on + strand, within Psyr_3281 at 3929.147 kb on + strand, within Psyr_3281 at 3929.386 kb on + strand at 3929.398 kb on + strand at 3929.664 kb on + strand, within Psyr_3282 at 3929.810 kb on + strand, within Psyr_3282 at 3929.810 kb on + strand at 3929.810 kb on + strand, within Psyr_3282 at 3929.811 kb on - strand, within Psyr_3282 at 3929.831 kb on + strand, within Psyr_3282 at 3929.831 kb on + strand, within Psyr_3282 at 3929.831 kb on + strand, within Psyr_3282 at 3929.831 kb on + strand, within Psyr_3282 at 3929.831 kb on + strand, within Psyr_3282 at 3929.831 kb on + strand, within Psyr_3282 at 3929.832 kb on - strand, within Psyr_3282 at 3929.832 kb on - strand, within Psyr_3282 at 3929.832 kb on - strand, within Psyr_3282 at 3929.832 kb on - strand, within Psyr_3282 at 3929.832 kb on - strand, within Psyr_3282 at 3929.832 kb on - strand, within Psyr_3282 at 3929.832 kb on - strand, within Psyr_3282 at 3929.832 kb on - strand, within Psyr_3282 at 3929.832 kb on - strand, within Psyr_3282 at 3929.832 kb on - strand, within Psyr_3282 at 3929.832 kb on - strand, within Psyr_3282 at 3930.098 kb on + strand, within Psyr_3282 at 3930.138 kb on + strand, within Psyr_3282 at 3930.262 kb on + strand at 3930.262 kb on + strand at 3930.263 kb on - strand at 3930.263 kb on - strand at 3930.263 kb on - strand at 3930.263 kb on - strand at 3930.266 kb on + strand at 3930.334 kb on - strand at 3930.389 kb on - strand at 3930.443 kb on + strand at 3930.444 kb on - strand at 3930.444 kb on - strand at 3930.445 kb on + strand at 3930.446 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acriflavine 7.75 ug/ml remove 3,928,741 - Psyr_3281 0.36 +2.0 3,928,909 + Psyr_3281 0.53 -0.2 3,929,147 + Psyr_3281 0.76 +0.4 3,929,147 + Psyr_3281 0.76 +0.6 3,929,386 + +0.6 3,929,398 + +0.4 3,929,664 + Psyr_3282 0.21 +0.3 3,929,810 + Psyr_3282 0.42 +0.3 3,929,810 + +0.8 3,929,810 + Psyr_3282 0.42 -0.2 3,929,811 - Psyr_3282 0.42 -1.6 3,929,831 + Psyr_3282 0.44 -0.2 3,929,831 + Psyr_3282 0.44 +0.8 3,929,831 + Psyr_3282 0.44 -0.6 3,929,831 + Psyr_3282 0.44 +0.4 3,929,831 + Psyr_3282 0.44 -0.7 3,929,831 + Psyr_3282 0.44 -0.7 3,929,832 - Psyr_3282 0.45 -0.6 3,929,832 - Psyr_3282 0.45 +1.2 3,929,832 - Psyr_3282 0.45 -2.9 3,929,832 - Psyr_3282 0.45 -1.2 3,929,832 - Psyr_3282 0.45 -2.2 3,929,832 - Psyr_3282 0.45 +0.8 3,929,832 - Psyr_3282 0.45 -0.2 3,929,832 - Psyr_3282 0.45 -0.7 3,929,832 - Psyr_3282 0.45 +0.3 3,929,832 - Psyr_3282 0.45 +0.8 3,929,832 - Psyr_3282 0.45 +0.6 3,930,098 + Psyr_3282 0.82 -1.2 3,930,138 + Psyr_3282 0.87 -2.2 3,930,262 + -1.4 3,930,262 + -1.5 3,930,263 - +0.4 3,930,263 - +0.6 3,930,263 - +0.4 3,930,263 - -0.2 3,930,266 + +0.4 3,930,334 - +0.6 3,930,389 - +0.4 3,930,443 + +2.8 3,930,444 - +0.4 3,930,444 - +0.4 3,930,445 + -0.2 3,930,446 - -1.0
Or see this region's nucleotide sequence