Experiment: KB with Acriflavine 7.75 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3141 and Psyr_3142 overlap by 1 nucleotides Psyr_3142 and Psyr_3143 overlap by 4 nucleotides Psyr_3143 and Psyr_3144 overlap by 26 nucleotides
Psyr_3141: Psyr_3141 - type II and III secretion system protein:NolW-like protein, at 3,766,783 to 3,769,113
_3141
Psyr_3142: Psyr_3142 - general secretion pathway protein N, putative, at 3,769,113 to 3,769,643
_3142
Psyr_3143: Psyr_3143 - general secretion pathway protein M, putative, at 3,769,640 to 3,770,251
_3143
Psyr_3144: Psyr_3144 - Fimbrial assembly, at 3,770,226 to 3,771,320
_3144
Position (kb)
3769
3770 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3768.150 kb on - strand, within Psyr_3141 at 3768.150 kb on - strand, within Psyr_3141 at 3768.359 kb on + strand, within Psyr_3141 at 3768.359 kb on + strand, within Psyr_3141 at 3768.360 kb on - strand, within Psyr_3141 at 3768.360 kb on - strand, within Psyr_3141 at 3768.360 kb on - strand, within Psyr_3141 at 3768.482 kb on + strand, within Psyr_3141 at 3768.483 kb on - strand, within Psyr_3141 at 3768.483 kb on - strand, within Psyr_3141 at 3768.722 kb on + strand, within Psyr_3141 at 3768.722 kb on + strand, within Psyr_3141 at 3768.722 kb on + strand, within Psyr_3141 at 3768.723 kb on - strand, within Psyr_3141 at 3768.723 kb on - strand, within Psyr_3141 at 3768.723 kb on - strand, within Psyr_3141 at 3768.723 kb on - strand, within Psyr_3141 at 3769.081 kb on - strand at 3769.220 kb on + strand, within Psyr_3142 at 3769.220 kb on + strand, within Psyr_3142 at 3769.220 kb on + strand, within Psyr_3142 at 3769.221 kb on - strand, within Psyr_3142 at 3769.449 kb on - strand, within Psyr_3142 at 3769.629 kb on + strand at 3769.629 kb on + strand at 3769.629 kb on + strand at 3769.630 kb on - strand at 3769.630 kb on - strand at 3769.630 kb on - strand at 3769.630 kb on - strand at 3769.750 kb on + strand, within Psyr_3143 at 3769.750 kb on + strand, within Psyr_3143 at 3769.750 kb on + strand, within Psyr_3143 at 3769.750 kb on + strand, within Psyr_3143 at 3769.751 kb on - strand, within Psyr_3143 at 3770.176 kb on - strand, within Psyr_3143 at 3770.450 kb on + strand, within Psyr_3144 at 3770.542 kb on + strand, within Psyr_3144 at 3770.542 kb on + strand, within Psyr_3144 at 3770.543 kb on - strand, within Psyr_3144 at 3770.543 kb on - strand, within Psyr_3144 at 3770.543 kb on - strand, within Psyr_3144 at 3770.543 kb on - strand, within Psyr_3144 at 3770.543 kb on - strand, within Psyr_3144
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acriflavine 7.75 ug/ml remove 3,768,150 - Psyr_3141 0.59 -0.4 3,768,150 - Psyr_3141 0.59 +0.5 3,768,359 + Psyr_3141 0.68 +1.8 3,768,359 + Psyr_3141 0.68 +2.0 3,768,360 - Psyr_3141 0.68 +2.5 3,768,360 - Psyr_3141 0.68 +0.8 3,768,360 - Psyr_3141 0.68 +0.4 3,768,482 + Psyr_3141 0.73 +2.2 3,768,483 - Psyr_3141 0.73 +2.2 3,768,483 - Psyr_3141 0.73 -0.0 3,768,722 + Psyr_3141 0.83 -1.0 3,768,722 + Psyr_3141 0.83 -0.2 3,768,722 + Psyr_3141 0.83 +0.2 3,768,723 - Psyr_3141 0.83 +1.4 3,768,723 - Psyr_3141 0.83 +0.8 3,768,723 - Psyr_3141 0.83 +1.4 3,768,723 - Psyr_3141 0.83 +0.8 3,769,081 - -0.8 3,769,220 + Psyr_3142 0.20 -0.3 3,769,220 + Psyr_3142 0.20 -0.0 3,769,220 + Psyr_3142 0.20 -1.7 3,769,221 - Psyr_3142 0.20 -0.8 3,769,449 - Psyr_3142 0.63 +0.1 3,769,629 + +0.3 3,769,629 + +0.4 3,769,629 + +0.8 3,769,630 - +0.1 3,769,630 - +0.2 3,769,630 - +0.4 3,769,630 - +0.6 3,769,750 + Psyr_3143 0.18 -0.6 3,769,750 + Psyr_3143 0.18 -1.1 3,769,750 + Psyr_3143 0.18 -0.4 3,769,750 + Psyr_3143 0.18 -0.3 3,769,751 - Psyr_3143 0.18 +0.3 3,770,176 - Psyr_3143 0.88 +0.3 3,770,450 + Psyr_3144 0.20 +0.2 3,770,542 + Psyr_3144 0.29 -1.1 3,770,542 + Psyr_3144 0.29 +0.5 3,770,543 - Psyr_3144 0.29 -0.8 3,770,543 - Psyr_3144 0.29 -2.3 3,770,543 - Psyr_3144 0.29 +0.2 3,770,543 - Psyr_3144 0.29 -1.1 3,770,543 - Psyr_3144 0.29 +1.2
Or see this region's nucleotide sequence