Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2957

Experiment: KB with Acriflavine 7.75 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2956 and Psyr_2957 are separated by 28 nucleotidesPsyr_2957 and Psyr_2958 are separated by 373 nucleotides Psyr_2956: Psyr_2956 - Zinc-containing alcohol dehydrogenase superfamily, at 3,543,485 to 3,544,594 _2956 Psyr_2957: Psyr_2957 - Glutathione-dependent formaldehyde-activating, GFA, at 3,544,623 to 3,545,243 _2957 Psyr_2958: Psyr_2958 - extracellular solute-binding protein, family 5, at 3,545,617 to 3,547,248 _2958 Position (kb) 3544 3545 3546Strain fitness (log2 ratio) -2 -1 0 1 2at 3543.660 kb on + strand, within Psyr_2956at 3543.697 kb on - strand, within Psyr_2956at 3543.778 kb on + strand, within Psyr_2956at 3543.779 kb on - strand, within Psyr_2956at 3543.863 kb on + strand, within Psyr_2956at 3543.864 kb on - strand, within Psyr_2956at 3543.881 kb on + strand, within Psyr_2956at 3543.882 kb on - strand, within Psyr_2956at 3543.887 kb on + strand, within Psyr_2956at 3543.887 kb on + strand, within Psyr_2956at 3543.887 kb on + strand, within Psyr_2956at 3543.887 kb on + strand, within Psyr_2956at 3543.888 kb on - strand, within Psyr_2956at 3543.888 kb on - strand, within Psyr_2956at 3543.914 kb on + strand, within Psyr_2956at 3543.915 kb on - strand, within Psyr_2956at 3544.435 kb on - strand, within Psyr_2956at 3544.435 kb on - strand, within Psyr_2956at 3544.589 kb on + strandat 3544.590 kb on - strandat 3544.590 kb on - strandat 3544.590 kb on - strandat 3544.590 kb on - strandat 3544.590 kb on - strandat 3544.590 kb on - strandat 3544.590 kb on - strandat 3544.647 kb on + strandat 3544.648 kb on - strandat 3544.649 kb on + strandat 3544.650 kb on - strandat 3544.659 kb on + strandat 3544.659 kb on + strandat 3544.659 kb on + strandat 3544.660 kb on - strandat 3544.932 kb on - strand, within Psyr_2957at 3544.970 kb on + strand, within Psyr_2957at 3544.970 kb on + strand, within Psyr_2957at 3544.970 kb on + strand, within Psyr_2957at 3544.970 kb on + strand, within Psyr_2957at 3544.970 kb on + strand, within Psyr_2957at 3544.971 kb on - strand, within Psyr_2957at 3544.971 kb on - strand, within Psyr_2957at 3544.971 kb on - strand, within Psyr_2957at 3544.974 kb on + strand, within Psyr_2957at 3544.974 kb on + strand, within Psyr_2957at 3544.974 kb on + strand, within Psyr_2957at 3544.974 kb on + strand, within Psyr_2957at 3544.974 kb on + strand, within Psyr_2957at 3544.974 kb on + strand, within Psyr_2957at 3544.974 kb on + strand, within Psyr_2957at 3544.974 kb on + strand, within Psyr_2957at 3544.974 kb on + strand, within Psyr_2957at 3544.975 kb on - strand, within Psyr_2957at 3544.975 kb on - strand, within Psyr_2957at 3544.975 kb on - strand, within Psyr_2957at 3544.975 kb on - strand, within Psyr_2957at 3544.975 kb on - strand, within Psyr_2957at 3544.975 kb on - strand, within Psyr_2957at 3544.975 kb on - strand, within Psyr_2957at 3544.975 kb on - strand, within Psyr_2957at 3544.975 kb on - strand, within Psyr_2957at 3544.975 kb on - strand, within Psyr_2957at 3544.975 kb on - strand, within Psyr_2957at 3544.975 kb on - strand, within Psyr_2957at 3545.163 kb on + strand, within Psyr_2957at 3545.164 kb on - strand, within Psyr_2957at 3545.164 kb on - strand, within Psyr_2957at 3545.209 kb on + strandat 3545.246 kb on + strandat 3545.247 kb on - strandat 3545.317 kb on + strandat 3545.317 kb on + strandat 3545.317 kb on + strandat 3545.317 kb on + strandat 3545.317 kb on + strandat 3545.317 kb on + strandat 3545.317 kb on + strandat 3545.317 kb on + strandat 3545.318 kb on - strandat 3545.318 kb on - strandat 3545.318 kb on - strandat 3545.814 kb on + strand, within Psyr_2958at 3545.909 kb on - strand, within Psyr_2958at 3545.909 kb on - strand, within Psyr_2958at 3545.983 kb on + strand, within Psyr_2958at 3546.235 kb on + strand, within Psyr_2958at 3546.235 kb on + strand, within Psyr_2958at 3546.235 kb on + strand, within Psyr_2958at 3546.238 kb on - strand, within Psyr_2958

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acriflavine 7.75 ug/ml
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3,543,660 + Psyr_2956 0.16 +1.0
3,543,697 - Psyr_2956 0.19 -1.1
3,543,778 + Psyr_2956 0.26 +2.1
3,543,779 - Psyr_2956 0.26 -0.4
3,543,863 + Psyr_2956 0.34 -0.9
3,543,864 - Psyr_2956 0.34 -0.9
3,543,881 + Psyr_2956 0.36 -1.0
3,543,882 - Psyr_2956 0.36 +0.7
3,543,887 + Psyr_2956 0.36 -1.2
3,543,887 + Psyr_2956 0.36 +0.3
3,543,887 + Psyr_2956 0.36 -0.3
3,543,887 + Psyr_2956 0.36 -1.7
3,543,888 - Psyr_2956 0.36 +1.1
3,543,888 - Psyr_2956 0.36 +1.0
3,543,914 + Psyr_2956 0.39 -0.3
3,543,915 - Psyr_2956 0.39 -1.0
3,544,435 - Psyr_2956 0.86 -0.6
3,544,435 - Psyr_2956 0.86 +1.4
3,544,589 + +0.5
3,544,590 - +0.9
3,544,590 - +1.5
3,544,590 - +1.1
3,544,590 - -0.3
3,544,590 - -0.8
3,544,590 - -2.3
3,544,590 - +1.3
3,544,647 + +0.5
3,544,648 - +0.7
3,544,649 + -0.6
3,544,650 - +0.1
3,544,659 + -0.6
3,544,659 + -1.6
3,544,659 + +2.3
3,544,660 - -0.0
3,544,932 - Psyr_2957 0.50 -0.3
3,544,970 + Psyr_2957 0.56 -1.9
3,544,970 + Psyr_2957 0.56 +0.1
3,544,970 + Psyr_2957 0.56 -1.1
3,544,970 + Psyr_2957 0.56 -1.6
3,544,970 + Psyr_2957 0.56 -0.2
3,544,971 - Psyr_2957 0.56 +0.2
3,544,971 - Psyr_2957 0.56 -2.3
3,544,971 - Psyr_2957 0.56 +1.0
3,544,974 + Psyr_2957 0.57 +2.1
3,544,974 + Psyr_2957 0.57 -1.4
3,544,974 + Psyr_2957 0.57 +0.1
3,544,974 + Psyr_2957 0.57 -0.7
3,544,974 + Psyr_2957 0.57 -1.0
3,544,974 + Psyr_2957 0.57 -1.6
3,544,974 + Psyr_2957 0.57 +0.1
3,544,974 + Psyr_2957 0.57 -1.6
3,544,974 + Psyr_2957 0.57 +0.1
3,544,975 - Psyr_2957 0.57 -2.3
3,544,975 - Psyr_2957 0.57 -0.8
3,544,975 - Psyr_2957 0.57 +0.6
3,544,975 - Psyr_2957 0.57 -0.8
3,544,975 - Psyr_2957 0.57 -0.6
3,544,975 - Psyr_2957 0.57 -0.9
3,544,975 - Psyr_2957 0.57 -0.4
3,544,975 - Psyr_2957 0.57 +1.1
3,544,975 - Psyr_2957 0.57 +2.1
3,544,975 - Psyr_2957 0.57 -2.1
3,544,975 - Psyr_2957 0.57 -1.4
3,544,975 - Psyr_2957 0.57 +1.3
3,545,163 + Psyr_2957 0.87 -0.6
3,545,164 - Psyr_2957 0.87 +1.1
3,545,164 - Psyr_2957 0.87 +1.2
3,545,209 + -1.6
3,545,246 + +0.6
3,545,247 - +1.4
3,545,317 + +0.1
3,545,317 + +2.1
3,545,317 + +1.4
3,545,317 + +1.7
3,545,317 + -0.6
3,545,317 + +0.3
3,545,317 + +1.7
3,545,317 + -0.1
3,545,318 - +0.5
3,545,318 - +1.7
3,545,318 - -1.1
3,545,814 + Psyr_2958 0.12 +1.3
3,545,909 - Psyr_2958 0.18 +0.5
3,545,909 - Psyr_2958 0.18 -0.6
3,545,983 + Psyr_2958 0.22 -2.1
3,546,235 + Psyr_2958 0.38 -0.6
3,546,235 + Psyr_2958 0.38 +0.5
3,546,235 + Psyr_2958 0.38 -0.3
3,546,238 - Psyr_2958 0.38 -1.2

Or see this region's nucleotide sequence