Experiment: KB with Acriflavine 7.75 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2066 and Psyr_2067 overlap by 1 nucleotides Psyr_2067 and Psyr_2068 overlap by 2 nucleotides Psyr_2068 and Psyr_2069 are separated by 56 nucleotides
Psyr_2066: Psyr_2066 - Protein of unknown function DUF214:Fimbrial assembly, at 2,411,391 to 2,413,907
_2066
Psyr_2067: Psyr_2067 - ABC transporter, at 2,413,907 to 2,414,590
_2067
Psyr_2068: Psyr_2068 - Arylesterase, at 2,414,589 to 2,415,206
_2068
Psyr_2069: Psyr_2069 - conserved hypothetical protein, at 2,415,263 to 2,415,544
_2069
Position (kb)
2413
2414
2415 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2413.352 kb on - strand, within Psyr_2066 at 2413.378 kb on + strand, within Psyr_2066 at 2413.386 kb on + strand, within Psyr_2066 at 2413.558 kb on + strand, within Psyr_2066 at 2413.775 kb on - strand at 2414.173 kb on + strand, within Psyr_2067 at 2414.495 kb on + strand, within Psyr_2067 at 2414.495 kb on + strand, within Psyr_2067 at 2414.496 kb on - strand, within Psyr_2067 at 2414.549 kb on + strand at 2414.549 kb on + strand at 2414.549 kb on + strand at 2414.578 kb on + strand at 2414.579 kb on - strand at 2414.617 kb on + strand at 2414.618 kb on - strand at 2414.618 kb on - strand at 2414.636 kb on - strand at 2414.687 kb on + strand, within Psyr_2068 at 2414.688 kb on - strand, within Psyr_2068 at 2414.688 kb on - strand, within Psyr_2068 at 2414.688 kb on - strand, within Psyr_2068 at 2414.690 kb on + strand, within Psyr_2068 at 2414.690 kb on + strand, within Psyr_2068 at 2414.690 kb on + strand, within Psyr_2068 at 2414.691 kb on - strand, within Psyr_2068 at 2414.691 kb on - strand, within Psyr_2068 at 2414.853 kb on - strand, within Psyr_2068 at 2414.853 kb on - strand, within Psyr_2068 at 2414.980 kb on + strand, within Psyr_2068 at 2415.006 kb on + strand, within Psyr_2068 at 2415.018 kb on + strand, within Psyr_2068 at 2415.100 kb on + strand, within Psyr_2068 at 2415.100 kb on + strand, within Psyr_2068 at 2415.288 kb on - strand at 2415.288 kb on - strand at 2415.288 kb on - strand at 2415.293 kb on + strand, within Psyr_2069 at 2415.397 kb on + strand, within Psyr_2069 at 2415.397 kb on + strand, within Psyr_2069 at 2415.398 kb on - strand, within Psyr_2069 at 2415.398 kb on - strand, within Psyr_2069 at 2415.542 kb on + strand at 2415.542 kb on + strand at 2415.542 kb on + strand at 2415.543 kb on - strand at 2415.543 kb on - strand at 2415.543 kb on - strand at 2415.543 kb on - strand at 2415.543 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acriflavine 7.75 ug/ml remove 2,413,352 - Psyr_2066 0.78 -0.4 2,413,378 + Psyr_2066 0.79 +0.2 2,413,386 + Psyr_2066 0.79 +0.5 2,413,558 + Psyr_2066 0.86 -1.2 2,413,775 - -0.3 2,414,173 + Psyr_2067 0.39 -0.9 2,414,495 + Psyr_2067 0.86 +0.5 2,414,495 + Psyr_2067 0.86 -0.3 2,414,496 - Psyr_2067 0.86 -0.8 2,414,549 + -0.4 2,414,549 + -1.0 2,414,549 + +1.1 2,414,578 + -0.2 2,414,579 - +1.0 2,414,617 + +1.1 2,414,618 - -1.9 2,414,618 - +0.1 2,414,636 - +0.4 2,414,687 + Psyr_2068 0.16 -0.1 2,414,688 - Psyr_2068 0.16 -0.5 2,414,688 - Psyr_2068 0.16 +1.1 2,414,688 - Psyr_2068 0.16 +0.9 2,414,690 + Psyr_2068 0.16 -0.5 2,414,690 + Psyr_2068 0.16 +2.1 2,414,690 + Psyr_2068 0.16 -0.9 2,414,691 - Psyr_2068 0.17 +0.1 2,414,691 - Psyr_2068 0.17 -0.7 2,414,853 - Psyr_2068 0.43 -0.8 2,414,853 - Psyr_2068 0.43 +0.1 2,414,980 + Psyr_2068 0.63 -0.5 2,415,006 + Psyr_2068 0.67 +1.3 2,415,018 + Psyr_2068 0.69 -0.7 2,415,100 + Psyr_2068 0.83 -0.6 2,415,100 + Psyr_2068 0.83 +0.7 2,415,288 - -0.7 2,415,288 - -0.5 2,415,288 - -0.5 2,415,293 + Psyr_2069 0.11 -0.3 2,415,397 + Psyr_2069 0.48 -1.8 2,415,397 + Psyr_2069 0.48 -0.9 2,415,398 - Psyr_2069 0.48 +1.9 2,415,398 - Psyr_2069 0.48 +0.5 2,415,542 + -0.5 2,415,542 + -0.6 2,415,542 + +1.0 2,415,543 - -1.7 2,415,543 - +1.1 2,415,543 - -1.2 2,415,543 - -1.2 2,415,543 - -0.2
Or see this region's nucleotide sequence