Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1128

Experiment: KB with Acriflavine 7.75 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1126 and Psyr_1127 overlap by 11 nucleotidesPsyr_1127 and Psyr_1128 are separated by 10 nucleotidesPsyr_1128 and Psyr_1129 overlap by 4 nucleotides Psyr_1126: Psyr_1126 - Heavy metal sensor kinase, at 1,274,985 to 1,276,349 _1126 Psyr_1127: Psyr_1127 - Heavy metal response regulator, at 1,276,339 to 1,277,016 _1127 Psyr_1128: Psyr_1128 - Acriflavin resistance protein, at 1,277,027 to 1,280,131 _1128 Psyr_1129: Psyr_1129 - Secretion protein HlyD, at 1,280,128 to 1,281,294 _1129 Position (kb) 1277 1278 1279 1280 1281Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1276.072 kb on + strand, within Psyr_1126at 1276.261 kb on + strandat 1276.261 kb on + strandat 1276.261 kb on + strandat 1276.261 kb on + strandat 1276.262 kb on - strandat 1276.262 kb on - strandat 1276.262 kb on - strandat 1276.262 kb on - strandat 1276.326 kb on + strandat 1276.326 kb on + strandat 1276.367 kb on + strandat 1276.367 kb on + strandat 1276.368 kb on - strandat 1276.461 kb on + strand, within Psyr_1127at 1276.618 kb on + strand, within Psyr_1127at 1276.727 kb on + strand, within Psyr_1127at 1276.727 kb on + strand, within Psyr_1127at 1276.944 kb on - strand, within Psyr_1127at 1276.944 kb on - strand, within Psyr_1127at 1276.973 kb on + strandat 1276.974 kb on - strandat 1277.100 kb on + strandat 1277.100 kb on + strandat 1277.100 kb on + strandat 1277.100 kb on + strandat 1277.101 kb on - strandat 1277.101 kb on - strandat 1277.101 kb on - strandat 1277.101 kb on - strandat 1277.283 kb on + strandat 1277.283 kb on + strandat 1277.283 kb on + strandat 1277.283 kb on + strandat 1277.283 kb on + strandat 1277.283 kb on + strandat 1277.283 kb on + strandat 1277.283 kb on + strandat 1277.283 kb on + strandat 1277.284 kb on - strandat 1277.284 kb on - strandat 1277.502 kb on + strand, within Psyr_1128at 1277.502 kb on + strand, within Psyr_1128at 1277.502 kb on + strand, within Psyr_1128at 1277.503 kb on - strand, within Psyr_1128at 1277.522 kb on - strand, within Psyr_1128at 1277.522 kb on - strand, within Psyr_1128at 1277.522 kb on - strand, within Psyr_1128at 1277.523 kb on + strand, within Psyr_1128at 1277.523 kb on + strand, within Psyr_1128at 1277.523 kb on + strand, within Psyr_1128at 1277.523 kb on + strand, within Psyr_1128at 1277.523 kb on + strand, within Psyr_1128at 1277.523 kb on + strand, within Psyr_1128at 1277.523 kb on + strand, within Psyr_1128at 1277.523 kb on + strand, within Psyr_1128at 1277.523 kb on + strand, within Psyr_1128at 1277.523 kb on + strand, within Psyr_1128at 1277.523 kb on + strand, within Psyr_1128at 1277.523 kb on + strand, within Psyr_1128at 1277.524 kb on - strand, within Psyr_1128at 1277.524 kb on - strand, within Psyr_1128at 1277.524 kb on - strand, within Psyr_1128at 1277.524 kb on - strand, within Psyr_1128at 1277.524 kb on - strand, within Psyr_1128at 1277.524 kb on - strand, within Psyr_1128at 1277.524 kb on - strand, within Psyr_1128at 1277.524 kb on - strand, within Psyr_1128at 1277.524 kb on - strand, within Psyr_1128at 1277.524 kb on - strand, within Psyr_1128at 1277.524 kb on - strand, within Psyr_1128at 1277.524 kb on - strand, within Psyr_1128at 1277.544 kb on - strand, within Psyr_1128at 1277.820 kb on + strand, within Psyr_1128at 1277.820 kb on + strand, within Psyr_1128at 1277.820 kb on + strand, within Psyr_1128at 1277.821 kb on - strand, within Psyr_1128at 1277.826 kb on + strand, within Psyr_1128at 1277.826 kb on + strand, within Psyr_1128at 1277.826 kb on + strand, within Psyr_1128at 1277.827 kb on - strand, within Psyr_1128at 1277.827 kb on - strand, within Psyr_1128at 1277.827 kb on - strand, within Psyr_1128at 1277.883 kb on + strand, within Psyr_1128at 1277.884 kb on - strand, within Psyr_1128at 1277.904 kb on + strand, within Psyr_1128at 1277.937 kb on + strand, within Psyr_1128at 1277.937 kb on + strand, within Psyr_1128at 1277.938 kb on - strand, within Psyr_1128at 1278.132 kb on + strand, within Psyr_1128at 1278.133 kb on - strand, within Psyr_1128at 1278.133 kb on - strand, within Psyr_1128at 1278.133 kb on - strand, within Psyr_1128at 1278.139 kb on - strand, within Psyr_1128at 1278.192 kb on + strand, within Psyr_1128at 1278.192 kb on + strand, within Psyr_1128at 1278.703 kb on + strand, within Psyr_1128at 1278.703 kb on + strand, within Psyr_1128at 1278.703 kb on + strand, within Psyr_1128at 1278.703 kb on + strand, within Psyr_1128at 1278.703 kb on + strand, within Psyr_1128at 1278.703 kb on + strand, within Psyr_1128at 1278.704 kb on - strand, within Psyr_1128at 1278.704 kb on - strand, within Psyr_1128at 1278.704 kb on - strand, within Psyr_1128at 1278.704 kb on - strand, within Psyr_1128at 1278.704 kb on - strand, within Psyr_1128at 1278.815 kb on + strand, within Psyr_1128at 1278.815 kb on + strand, within Psyr_1128at 1278.815 kb on + strand, within Psyr_1128at 1278.987 kb on + strand, within Psyr_1128at 1278.987 kb on + strand, within Psyr_1128at 1278.987 kb on + strand, within Psyr_1128at 1278.987 kb on + strand, within Psyr_1128at 1278.987 kb on + strand, within Psyr_1128at 1278.987 kb on + strand, within Psyr_1128at 1278.987 kb on + strand, within Psyr_1128at 1278.988 kb on - strand, within Psyr_1128at 1278.988 kb on - strand, within Psyr_1128at 1278.988 kb on - strand, within Psyr_1128at 1279.312 kb on - strand, within Psyr_1128at 1279.378 kb on - strand, within Psyr_1128at 1279.378 kb on - strand, within Psyr_1128at 1279.378 kb on - strand, within Psyr_1128at 1279.398 kb on + strand, within Psyr_1128at 1279.399 kb on - strand, within Psyr_1128at 1279.444 kb on + strand, within Psyr_1128at 1279.444 kb on + strand, within Psyr_1128at 1279.444 kb on + strand, within Psyr_1128at 1279.445 kb on - strand, within Psyr_1128at 1279.445 kb on - strand, within Psyr_1128at 1279.459 kb on - strand, within Psyr_1128at 1279.530 kb on - strand, within Psyr_1128at 1279.913 kb on + strandat 1279.913 kb on + strandat 1279.914 kb on - strandat 1279.914 kb on - strandat 1279.914 kb on - strandat 1280.233 kb on + strandat 1280.233 kb on + strandat 1280.233 kb on + strandat 1280.233 kb on + strandat 1280.233 kb on + strandat 1280.234 kb on - strandat 1280.234 kb on - strandat 1280.283 kb on - strand, within Psyr_1129at 1280.308 kb on + strand, within Psyr_1129at 1280.308 kb on + strand, within Psyr_1129at 1280.309 kb on - strand, within Psyr_1129at 1280.309 kb on - strand, within Psyr_1129at 1280.309 kb on - strand, within Psyr_1129at 1280.309 kb on - strand, within Psyr_1129at 1280.309 kb on - strand, within Psyr_1129at 1280.309 kb on - strand, within Psyr_1129at 1280.592 kb on + strand, within Psyr_1129at 1280.592 kb on + strand, within Psyr_1129at 1280.593 kb on - strand, within Psyr_1129at 1280.775 kb on - strand, within Psyr_1129at 1280.775 kb on - strand, within Psyr_1129

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acriflavine 7.75 ug/ml
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1,276,072 + Psyr_1126 0.80 -2.2
1,276,261 + -0.3
1,276,261 + -1.7
1,276,261 + +1.5
1,276,261 + -0.6
1,276,262 - -2.7
1,276,262 - -1.1
1,276,262 - -0.1
1,276,262 - +0.9
1,276,326 + +0.3
1,276,326 + -0.1
1,276,367 + -0.1
1,276,367 + -0.9
1,276,368 - -0.3
1,276,461 + Psyr_1127 0.18 -2.8
1,276,618 + Psyr_1127 0.41 -0.8
1,276,727 + Psyr_1127 0.57 -0.1
1,276,727 + Psyr_1127 0.57 -0.8
1,276,944 - Psyr_1127 0.89 +0.7
1,276,944 - Psyr_1127 0.89 +2.5
1,276,973 + -0.2
1,276,974 - -0.8
1,277,100 + -0.9
1,277,100 + +1.9
1,277,100 + +0.5
1,277,100 + +0.2
1,277,101 - +2.9
1,277,101 - -0.5
1,277,101 - -0.3
1,277,101 - +0.3
1,277,283 + -0.7
1,277,283 + -0.2
1,277,283 + +0.3
1,277,283 + +0.5
1,277,283 + -0.3
1,277,283 + +0.2
1,277,283 + +0.3
1,277,283 + -0.7
1,277,283 + -0.3
1,277,284 - -0.9
1,277,284 - +1.5
1,277,502 + Psyr_1128 0.15 +0.7
1,277,502 + Psyr_1128 0.15 -0.2
1,277,502 + Psyr_1128 0.15 +1.5
1,277,503 - Psyr_1128 0.15 -0.7
1,277,522 - Psyr_1128 0.16 +0.9
1,277,522 - Psyr_1128 0.16 +0.6
1,277,522 - Psyr_1128 0.16 -0.9
1,277,523 + Psyr_1128 0.16 -0.8
1,277,523 + Psyr_1128 0.16 -0.7
1,277,523 + Psyr_1128 0.16 -1.7
1,277,523 + Psyr_1128 0.16 -0.3
1,277,523 + Psyr_1128 0.16 +0.7
1,277,523 + Psyr_1128 0.16 -0.0
1,277,523 + Psyr_1128 0.16 +0.9
1,277,523 + Psyr_1128 0.16 -0.4
1,277,523 + Psyr_1128 0.16 +1.1
1,277,523 + Psyr_1128 0.16 -1.1
1,277,523 + Psyr_1128 0.16 +0.5
1,277,523 + Psyr_1128 0.16 +0.2
1,277,524 - Psyr_1128 0.16 -0.5
1,277,524 - Psyr_1128 0.16 -0.4
1,277,524 - Psyr_1128 0.16 +0.7
1,277,524 - Psyr_1128 0.16 +0.1
1,277,524 - Psyr_1128 0.16 -0.6
1,277,524 - Psyr_1128 0.16 +0.9
1,277,524 - Psyr_1128 0.16 -0.7
1,277,524 - Psyr_1128 0.16 +0.5
1,277,524 - Psyr_1128 0.16 -2.1
1,277,524 - Psyr_1128 0.16 -0.8
1,277,524 - Psyr_1128 0.16 +0.9
1,277,524 - Psyr_1128 0.16 -0.7
1,277,544 - Psyr_1128 0.17 -0.4
1,277,820 + Psyr_1128 0.26 -0.3
1,277,820 + Psyr_1128 0.26 +0.2
1,277,820 + Psyr_1128 0.26 -3.5
1,277,821 - Psyr_1128 0.26 +0.6
1,277,826 + Psyr_1128 0.26 -2.5
1,277,826 + Psyr_1128 0.26 +0.4
1,277,826 + Psyr_1128 0.26 -0.2
1,277,827 - Psyr_1128 0.26 -1.0
1,277,827 - Psyr_1128 0.26 -0.6
1,277,827 - Psyr_1128 0.26 -1.7
1,277,883 + Psyr_1128 0.28 -2.8
1,277,884 - Psyr_1128 0.28 -0.7
1,277,904 + Psyr_1128 0.28 -0.2
1,277,937 + Psyr_1128 0.29 -1.1
1,277,937 + Psyr_1128 0.29 +1.9
1,277,938 - Psyr_1128 0.29 -1.2
1,278,132 + Psyr_1128 0.36 +0.0
1,278,133 - Psyr_1128 0.36 +0.6
1,278,133 - Psyr_1128 0.36 +0.1
1,278,133 - Psyr_1128 0.36 +0.0
1,278,139 - Psyr_1128 0.36 +0.1
1,278,192 + Psyr_1128 0.38 +0.9
1,278,192 + Psyr_1128 0.38 -0.2
1,278,703 + Psyr_1128 0.54 +0.9
1,278,703 + Psyr_1128 0.54 +0.1
1,278,703 + Psyr_1128 0.54 -0.1
1,278,703 + Psyr_1128 0.54 +1.0
1,278,703 + Psyr_1128 0.54 -0.1
1,278,703 + Psyr_1128 0.54 -1.9
1,278,704 - Psyr_1128 0.54 +0.4
1,278,704 - Psyr_1128 0.54 -0.1
1,278,704 - Psyr_1128 0.54 +0.2
1,278,704 - Psyr_1128 0.54 -1.2
1,278,704 - Psyr_1128 0.54 -0.0
1,278,815 + Psyr_1128 0.58 -0.4
1,278,815 + Psyr_1128 0.58 -2.1
1,278,815 + Psyr_1128 0.58 +2.3
1,278,987 + Psyr_1128 0.63 -1.2
1,278,987 + Psyr_1128 0.63 -0.5
1,278,987 + Psyr_1128 0.63 -0.3
1,278,987 + Psyr_1128 0.63 -1.7
1,278,987 + Psyr_1128 0.63 +1.3
1,278,987 + Psyr_1128 0.63 -0.5
1,278,987 + Psyr_1128 0.63 -1.7
1,278,988 - Psyr_1128 0.63 +0.7
1,278,988 - Psyr_1128 0.63 +0.2
1,278,988 - Psyr_1128 0.63 -0.6
1,279,312 - Psyr_1128 0.74 -0.9
1,279,378 - Psyr_1128 0.76 -0.9
1,279,378 - Psyr_1128 0.76 +0.9
1,279,378 - Psyr_1128 0.76 -1.7
1,279,398 + Psyr_1128 0.76 +0.3
1,279,399 - Psyr_1128 0.76 -0.9
1,279,444 + Psyr_1128 0.78 -0.6
1,279,444 + Psyr_1128 0.78 -0.1
1,279,444 + Psyr_1128 0.78 -0.1
1,279,445 - Psyr_1128 0.78 -0.7
1,279,445 - Psyr_1128 0.78 -1.8
1,279,459 - Psyr_1128 0.78 +0.4
1,279,530 - Psyr_1128 0.81 +0.1
1,279,913 + -0.3
1,279,913 + -0.9
1,279,914 - -0.9
1,279,914 - +0.5
1,279,914 - +0.6
1,280,233 + +2.5
1,280,233 + +2.7
1,280,233 + -0.1
1,280,233 + -1.1
1,280,233 + +1.4
1,280,234 - +0.9
1,280,234 - -0.3
1,280,283 - Psyr_1129 0.13 +0.1
1,280,308 + Psyr_1129 0.15 +0.5
1,280,308 + Psyr_1129 0.15 +1.1
1,280,309 - Psyr_1129 0.16 +0.4
1,280,309 - Psyr_1129 0.16 -0.1
1,280,309 - Psyr_1129 0.16 +0.6
1,280,309 - Psyr_1129 0.16 -0.7
1,280,309 - Psyr_1129 0.16 +0.9
1,280,309 - Psyr_1129 0.16 -2.1
1,280,592 + Psyr_1129 0.40 -0.6
1,280,592 + Psyr_1129 0.40 +1.1
1,280,593 - Psyr_1129 0.40 -0.8
1,280,775 - Psyr_1129 0.55 +0.4
1,280,775 - Psyr_1129 0.55 +1.3

Or see this region's nucleotide sequence