Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1120

Experiment: KB with Acriflavine 7.75 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1119 and Psyr_1120 are separated by 218 nucleotidesPsyr_1120 and Psyr_1121 overlap by 14 nucleotidesPsyr_1121 and Psyr_1122 are separated by 36 nucleotides Psyr_1119: Psyr_1119 - Helix-turn-helix protein RpiR:Sugar isomerase (SIS), at 1,268,157 to 1,269,023 _1119 Psyr_1120: Psyr_1120 - glucose-6-phosphate 1-dehydrogenase, at 1,269,242 to 1,270,711 _1120 Psyr_1121: Psyr_1121 - 6-phosphogluconolactonase, at 1,270,698 to 1,271,411 _1121 Psyr_1122: Psyr_1122 - 2-keto-3-deoxy-phosphogluconate aldolase, at 1,271,448 to 1,272,122 _1122 Position (kb) 1269 1270 1271Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1268.309 kb on + strand, within Psyr_1119at 1268.310 kb on - strand, within Psyr_1119at 1268.311 kb on + strand, within Psyr_1119at 1268.311 kb on + strand, within Psyr_1119at 1268.311 kb on + strand, within Psyr_1119at 1268.311 kb on + strand, within Psyr_1119at 1268.311 kb on + strand, within Psyr_1119at 1268.311 kb on + strand, within Psyr_1119at 1268.311 kb on + strand, within Psyr_1119at 1268.311 kb on + strand, within Psyr_1119at 1268.311 kb on + strand, within Psyr_1119at 1268.311 kb on + strand, within Psyr_1119at 1268.312 kb on - strand, within Psyr_1119at 1268.312 kb on - strand, within Psyr_1119at 1268.312 kb on - strand, within Psyr_1119at 1268.312 kb on - strand, within Psyr_1119at 1268.312 kb on - strand, within Psyr_1119at 1268.312 kb on - strand, within Psyr_1119at 1268.312 kb on - strand, within Psyr_1119at 1268.312 kb on - strand, within Psyr_1119at 1268.312 kb on - strand, within Psyr_1119at 1268.312 kb on - strand, within Psyr_1119at 1268.312 kb on - strand, within Psyr_1119at 1268.312 kb on - strand, within Psyr_1119at 1268.312 kb on - strand, within Psyr_1119at 1268.312 kb on - strand, within Psyr_1119at 1268.315 kb on + strand, within Psyr_1119at 1268.315 kb on + strand, within Psyr_1119at 1268.316 kb on - strand, within Psyr_1119at 1268.321 kb on + strand, within Psyr_1119at 1268.354 kb on + strand, within Psyr_1119at 1268.567 kb on + strand, within Psyr_1119at 1268.568 kb on - strand, within Psyr_1119at 1268.568 kb on - strand, within Psyr_1119at 1268.568 kb on - strand, within Psyr_1119at 1268.729 kb on + strand, within Psyr_1119at 1268.731 kb on + strand, within Psyr_1119at 1268.731 kb on + strand, within Psyr_1119at 1268.732 kb on - strand, within Psyr_1119at 1268.732 kb on - strand, within Psyr_1119at 1268.732 kb on - strand, within Psyr_1119at 1268.773 kb on + strand, within Psyr_1119at 1268.773 kb on + strand, within Psyr_1119at 1268.774 kb on - strand, within Psyr_1119at 1268.774 kb on - strand, within Psyr_1119at 1269.048 kb on + strandat 1269.049 kb on - strandat 1269.049 kb on - strandat 1269.073 kb on + strandat 1269.073 kb on + strandat 1269.110 kb on + strandat 1269.142 kb on - strandat 1269.173 kb on + strandat 1269.178 kb on - strandat 1269.253 kb on + strandat 1269.329 kb on + strandat 1269.419 kb on + strand, within Psyr_1120at 1269.419 kb on + strand, within Psyr_1120at 1269.419 kb on + strand, within Psyr_1120at 1269.503 kb on + strand, within Psyr_1120at 1269.503 kb on + strand, within Psyr_1120at 1269.536 kb on + strand, within Psyr_1120at 1269.536 kb on + strand, within Psyr_1120at 1269.584 kb on + strand, within Psyr_1120at 1269.584 kb on + strand, within Psyr_1120at 1269.584 kb on + strand, within Psyr_1120at 1269.767 kb on + strand, within Psyr_1120at 1269.767 kb on + strand, within Psyr_1120at 1269.850 kb on + strand, within Psyr_1120at 1269.850 kb on + strand, within Psyr_1120at 1269.850 kb on + strand, within Psyr_1120at 1269.850 kb on + strand, within Psyr_1120at 1269.850 kb on + strand, within Psyr_1120at 1269.850 kb on + strand, within Psyr_1120at 1269.850 kb on + strand, within Psyr_1120at 1269.861 kb on + strand, within Psyr_1120at 1269.861 kb on + strand, within Psyr_1120at 1269.861 kb on + strand, within Psyr_1120at 1269.861 kb on + strand, within Psyr_1120at 1269.861 kb on + strand, within Psyr_1120at 1269.908 kb on + strand, within Psyr_1120at 1270.097 kb on + strand, within Psyr_1120at 1270.235 kb on + strand, within Psyr_1120at 1270.235 kb on + strand, within Psyr_1120at 1270.235 kb on + strand, within Psyr_1120at 1270.235 kb on + strand, within Psyr_1120at 1270.235 kb on + strand, within Psyr_1120at 1270.307 kb on + strand, within Psyr_1120at 1270.307 kb on + strand, within Psyr_1120at 1270.307 kb on + strand, within Psyr_1120at 1270.307 kb on + strand, within Psyr_1120at 1270.307 kb on + strand, within Psyr_1120at 1270.469 kb on + strand, within Psyr_1120at 1270.470 kb on - strand, within Psyr_1120at 1270.496 kb on + strand, within Psyr_1120at 1270.496 kb on + strand, within Psyr_1120at 1270.496 kb on + strand, within Psyr_1120at 1270.497 kb on - strand, within Psyr_1120at 1270.565 kb on + strandat 1270.697 kb on + strandat 1271.031 kb on + strand, within Psyr_1121at 1271.101 kb on + strand, within Psyr_1121at 1271.101 kb on + strand, within Psyr_1121at 1271.107 kb on + strand, within Psyr_1121at 1271.409 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acriflavine 7.75 ug/ml
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1,268,309 + Psyr_1119 0.18 -1.2
1,268,310 - Psyr_1119 0.18 +1.5
1,268,311 + Psyr_1119 0.18 -0.1
1,268,311 + Psyr_1119 0.18 -1.2
1,268,311 + Psyr_1119 0.18 -0.1
1,268,311 + Psyr_1119 0.18 -1.0
1,268,311 + Psyr_1119 0.18 -1.4
1,268,311 + Psyr_1119 0.18 +0.3
1,268,311 + Psyr_1119 0.18 -1.5
1,268,311 + Psyr_1119 0.18 -0.7
1,268,311 + Psyr_1119 0.18 -0.3
1,268,311 + Psyr_1119 0.18 +0.3
1,268,312 - Psyr_1119 0.18 -0.2
1,268,312 - Psyr_1119 0.18 -1.7
1,268,312 - Psyr_1119 0.18 +1.3
1,268,312 - Psyr_1119 0.18 -1.1
1,268,312 - Psyr_1119 0.18 -2.1
1,268,312 - Psyr_1119 0.18 -0.6
1,268,312 - Psyr_1119 0.18 +0.0
1,268,312 - Psyr_1119 0.18 -0.7
1,268,312 - Psyr_1119 0.18 -0.7
1,268,312 - Psyr_1119 0.18 -0.5
1,268,312 - Psyr_1119 0.18 -0.3
1,268,312 - Psyr_1119 0.18 +1.0
1,268,312 - Psyr_1119 0.18 +0.9
1,268,312 - Psyr_1119 0.18 +0.4
1,268,315 + Psyr_1119 0.18 -1.7
1,268,315 + Psyr_1119 0.18 -0.9
1,268,316 - Psyr_1119 0.18 +0.3
1,268,321 + Psyr_1119 0.19 -1.1
1,268,354 + Psyr_1119 0.23 +0.3
1,268,567 + Psyr_1119 0.47 -2.2
1,268,568 - Psyr_1119 0.47 -0.5
1,268,568 - Psyr_1119 0.47 -1.1
1,268,568 - Psyr_1119 0.47 -0.9
1,268,729 + Psyr_1119 0.66 -1.7
1,268,731 + Psyr_1119 0.66 +0.3
1,268,731 + Psyr_1119 0.66 +0.0
1,268,732 - Psyr_1119 0.66 +0.9
1,268,732 - Psyr_1119 0.66 -1.4
1,268,732 - Psyr_1119 0.66 +0.9
1,268,773 + Psyr_1119 0.71 +1.3
1,268,773 + Psyr_1119 0.71 -2.0
1,268,774 - Psyr_1119 0.71 -0.7
1,268,774 - Psyr_1119 0.71 +0.4
1,269,048 + -0.3
1,269,049 - -0.1
1,269,049 - +0.4
1,269,073 + +0.4
1,269,073 + -1.1
1,269,110 + -0.1
1,269,142 - -3.2
1,269,173 + +1.3
1,269,178 - -0.3
1,269,253 + -0.3
1,269,329 + +1.4
1,269,419 + Psyr_1120 0.12 +1.9
1,269,419 + Psyr_1120 0.12 -1.1
1,269,419 + Psyr_1120 0.12 +0.6
1,269,503 + Psyr_1120 0.18 -1.5
1,269,503 + Psyr_1120 0.18 -0.7
1,269,536 + Psyr_1120 0.20 -0.1
1,269,536 + Psyr_1120 0.20 +0.3
1,269,584 + Psyr_1120 0.23 -0.2
1,269,584 + Psyr_1120 0.23 -0.7
1,269,584 + Psyr_1120 0.23 +1.3
1,269,767 + Psyr_1120 0.36 -2.1
1,269,767 + Psyr_1120 0.36 -1.0
1,269,850 + Psyr_1120 0.41 +1.3
1,269,850 + Psyr_1120 0.41 +0.6
1,269,850 + Psyr_1120 0.41 +0.3
1,269,850 + Psyr_1120 0.41 -0.3
1,269,850 + Psyr_1120 0.41 -0.4
1,269,850 + Psyr_1120 0.41 -1.1
1,269,850 + Psyr_1120 0.41 -0.8
1,269,861 + Psyr_1120 0.42 -1.6
1,269,861 + Psyr_1120 0.42 -0.1
1,269,861 + Psyr_1120 0.42 -0.2
1,269,861 + Psyr_1120 0.42 -1.1
1,269,861 + Psyr_1120 0.42 +2.1
1,269,908 + Psyr_1120 0.45 -1.9
1,270,097 + Psyr_1120 0.58 -0.8
1,270,235 + Psyr_1120 0.68 -1.4
1,270,235 + Psyr_1120 0.68 -0.4
1,270,235 + Psyr_1120 0.68 -1.7
1,270,235 + Psyr_1120 0.68 -1.2
1,270,235 + Psyr_1120 0.68 -0.5
1,270,307 + Psyr_1120 0.72 -0.1
1,270,307 + Psyr_1120 0.72 -2.1
1,270,307 + Psyr_1120 0.72 -2.1
1,270,307 + Psyr_1120 0.72 +0.1
1,270,307 + Psyr_1120 0.72 -1.7
1,270,469 + Psyr_1120 0.83 -2.1
1,270,470 - Psyr_1120 0.84 -1.1
1,270,496 + Psyr_1120 0.85 -0.2
1,270,496 + Psyr_1120 0.85 +0.7
1,270,496 + Psyr_1120 0.85 -0.5
1,270,497 - Psyr_1120 0.85 -0.1
1,270,565 + +0.9
1,270,697 + +1.1
1,271,031 + Psyr_1121 0.47 -0.9
1,271,101 + Psyr_1121 0.56 -2.1
1,271,101 + Psyr_1121 0.56 +0.2
1,271,107 + Psyr_1121 0.57 +0.5
1,271,409 + +0.3

Or see this region's nucleotide sequence