Experiment: KB with Acriflavine 7.75 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0551 and Psyr_0552 overlap by 4 nucleotides Psyr_0552 and Psyr_0553 overlap by 4 nucleotides Psyr_0553 and Psyr_0554 are separated by 10 nucleotides
Psyr_0551: Psyr_0551 - DNA topoisomerase IV subunit B, at 622,501 to 624,405
_0551
Psyr_0552: Psyr_0552 - conserved hypothetical protein, at 624,402 to 625,379
_0552
Psyr_0553: Psyr_0553 - conserved hypothetical protein, at 625,376 to 625,897
_0553
Psyr_0554: Psyr_0554 - DNA topoisomerase IV subunit A, at 625,908 to 628,163
_0554
Position (kb) 625
626 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 624.407 kb on - strand at 624.632 kb on + strand, within Psyr_0552 at 624.657 kb on + strand, within Psyr_0552 at 624.657 kb on + strand, within Psyr_0552 at 624.657 kb on + strand, within Psyr_0552 at 624.657 kb on + strand, within Psyr_0552 at 624.657 kb on + strand, within Psyr_0552 at 624.713 kb on + strand, within Psyr_0552 at 624.713 kb on + strand, within Psyr_0552 at 625.098 kb on + strand, within Psyr_0552 at 625.098 kb on + strand, within Psyr_0552 at 625.098 kb on + strand, within Psyr_0552 at 625.098 kb on + strand, within Psyr_0552 at 625.099 kb on - strand, within Psyr_0552 at 625.293 kb on - strand at 625.529 kb on + strand, within Psyr_0553 at 625.529 kb on + strand, within Psyr_0553 at 625.531 kb on + strand, within Psyr_0553 at 625.531 kb on + strand, within Psyr_0553 at 625.531 kb on + strand, within Psyr_0553 at 625.531 kb on + strand, within Psyr_0553 at 625.531 kb on + strand, within Psyr_0553 at 625.531 kb on + strand, within Psyr_0553 at 625.533 kb on + strand, within Psyr_0553 at 625.533 kb on + strand, within Psyr_0553 at 625.533 kb on + strand, within Psyr_0553 at 625.533 kb on + strand, within Psyr_0553 at 625.533 kb on + strand, within Psyr_0553 at 625.533 kb on + strand, within Psyr_0553 at 625.533 kb on + strand, within Psyr_0553 at 625.533 kb on + strand, within Psyr_0553 at 625.533 kb on + strand, within Psyr_0553 at 625.533 kb on + strand, within Psyr_0553 at 625.533 kb on + strand, within Psyr_0553 at 625.533 kb on + strand at 625.533 kb on + strand, within Psyr_0553 at 625.533 kb on + strand, within Psyr_0553 at 625.533 kb on + strand, within Psyr_0553 at 625.533 kb on + strand, within Psyr_0553 at 625.533 kb on + strand, within Psyr_0553 at 625.533 kb on + strand, within Psyr_0553 at 625.533 kb on + strand, within Psyr_0553 at 625.533 kb on + strand, within Psyr_0553 at 625.533 kb on + strand, within Psyr_0553 at 625.533 kb on + strand, within Psyr_0553 at 625.533 kb on + strand, within Psyr_0553 at 625.534 kb on - strand, within Psyr_0553 at 625.534 kb on - strand, within Psyr_0553 at 625.534 kb on - strand, within Psyr_0553 at 625.534 kb on - strand, within Psyr_0553 at 625.534 kb on - strand, within Psyr_0553 at 625.534 kb on - strand, within Psyr_0553 at 625.534 kb on - strand, within Psyr_0553 at 625.534 kb on - strand, within Psyr_0553 at 625.534 kb on - strand, within Psyr_0553 at 625.534 kb on - strand, within Psyr_0553 at 625.534 kb on - strand, within Psyr_0553 at 625.534 kb on - strand, within Psyr_0553 at 625.534 kb on - strand, within Psyr_0553
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acriflavine 7.75 ug/ml remove 624,407 - -1.3 624,632 + Psyr_0552 0.24 +0.1 624,657 + Psyr_0552 0.26 -2.4 624,657 + Psyr_0552 0.26 -1.5 624,657 + Psyr_0552 0.26 -0.1 624,657 + Psyr_0552 0.26 +0.3 624,657 + Psyr_0552 0.26 -1.3 624,713 + Psyr_0552 0.32 -0.1 624,713 + Psyr_0552 0.32 +0.2 625,098 + Psyr_0552 0.71 -1.4 625,098 + Psyr_0552 0.71 +0.3 625,098 + Psyr_0552 0.71 -0.6 625,098 + Psyr_0552 0.71 -0.1 625,099 - Psyr_0552 0.71 -1.9 625,293 - -0.5 625,529 + Psyr_0553 0.29 +1.6 625,529 + Psyr_0553 0.29 -1.9 625,531 + Psyr_0553 0.30 +0.0 625,531 + Psyr_0553 0.30 -1.2 625,531 + Psyr_0553 0.30 -0.7 625,531 + Psyr_0553 0.30 -1.8 625,531 + Psyr_0553 0.30 -1.1 625,531 + Psyr_0553 0.30 +0.4 625,533 + Psyr_0553 0.30 -2.1 625,533 + Psyr_0553 0.30 -0.8 625,533 + Psyr_0553 0.30 -1.9 625,533 + Psyr_0553 0.30 +0.1 625,533 + Psyr_0553 0.30 -0.1 625,533 + Psyr_0553 0.30 -0.9 625,533 + Psyr_0553 0.30 -0.1 625,533 + Psyr_0553 0.30 -1.0 625,533 + Psyr_0553 0.30 -0.9 625,533 + Psyr_0553 0.30 -0.9 625,533 + Psyr_0553 0.30 +0.1 625,533 + +2.5 625,533 + Psyr_0553 0.30 +0.5 625,533 + Psyr_0553 0.30 -1.0 625,533 + Psyr_0553 0.30 -0.9 625,533 + Psyr_0553 0.30 -0.6 625,533 + Psyr_0553 0.30 +0.7 625,533 + Psyr_0553 0.30 -0.3 625,533 + Psyr_0553 0.30 -1.1 625,533 + Psyr_0553 0.30 -1.5 625,533 + Psyr_0553 0.30 +2.9 625,533 + Psyr_0553 0.30 +0.9 625,533 + Psyr_0553 0.30 +1.9 625,534 - Psyr_0553 0.30 -0.1 625,534 - Psyr_0553 0.30 -1.9 625,534 - Psyr_0553 0.30 -2.5 625,534 - Psyr_0553 0.30 -1.5 625,534 - Psyr_0553 0.30 -1.2 625,534 - Psyr_0553 0.30 -0.4 625,534 - Psyr_0553 0.30 -2.3 625,534 - Psyr_0553 0.30 +1.5 625,534 - Psyr_0553 0.30 -2.0 625,534 - Psyr_0553 0.30 -0.7 625,534 - Psyr_0553 0.30 -0.4 625,534 - Psyr_0553 0.30 -2.0 625,534 - Psyr_0553 0.30 -1.4
Or see this region's nucleotide sequence