Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0231

Experiment: KB with Acriflavine 7.75 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0230 and Psyr_0231 are separated by 175 nucleotidesPsyr_0231 and Psyr_0232 are separated by 2 nucleotides Psyr_0230: Psyr_0230 - transcriptional regulator, GntR family, at 244,835 to 246,256 _0230 Psyr_0231: Psyr_0231 - conserved hypothetical protein, at 246,432 to 246,683 _0231 Psyr_0232: Psyr_0232 - gamma-glutamylputrescine oxidase, at 246,686 to 247,999 _0232 Position (kb) 246 247Strain fitness (log2 ratio) -2 -1 0 1 2 3at 245.490 kb on + strand, within Psyr_0230at 245.490 kb on + strand, within Psyr_0230at 245.490 kb on + strand, within Psyr_0230at 245.491 kb on - strand, within Psyr_0230at 245.491 kb on - strand, within Psyr_0230at 245.491 kb on - strand, within Psyr_0230at 245.820 kb on + strand, within Psyr_0230at 245.820 kb on + strand, within Psyr_0230at 245.821 kb on - strand, within Psyr_0230at 245.835 kb on + strand, within Psyr_0230at 245.995 kb on + strand, within Psyr_0230at 246.067 kb on - strand, within Psyr_0230at 246.137 kb on - strandat 246.137 kb on - strandat 246.199 kb on - strandat 246.199 kb on - strandat 246.199 kb on - strandat 246.246 kb on + strandat 246.246 kb on + strandat 246.246 kb on + strandat 246.246 kb on + strandat 246.246 kb on + strandat 246.247 kb on - strandat 246.261 kb on + strandat 246.310 kb on - strandat 246.311 kb on + strandat 246.312 kb on - strandat 246.312 kb on - strandat 246.312 kb on - strandat 246.350 kb on + strandat 246.351 kb on - strandat 246.562 kb on - strand, within Psyr_0231at 246.562 kb on - strand, within Psyr_0231at 246.562 kb on - strand, within Psyr_0231at 246.876 kb on + strand, within Psyr_0232at 246.876 kb on + strand, within Psyr_0232at 246.877 kb on - strand, within Psyr_0232at 246.877 kb on - strand, within Psyr_0232at 246.888 kb on + strand, within Psyr_0232at 246.888 kb on + strand, within Psyr_0232at 246.888 kb on + strand, within Psyr_0232at 246.889 kb on - strand, within Psyr_0232at 246.893 kb on + strand, within Psyr_0232at 246.893 kb on + strand, within Psyr_0232at 246.893 kb on + strand, within Psyr_0232at 246.893 kb on + strand, within Psyr_0232at 246.893 kb on + strand, within Psyr_0232at 246.893 kb on + strand, within Psyr_0232at 246.893 kb on + strand, within Psyr_0232at 246.894 kb on - strand, within Psyr_0232at 246.894 kb on - strand, within Psyr_0232at 246.894 kb on - strand, within Psyr_0232at 246.894 kb on - strand, within Psyr_0232at 246.894 kb on - strand, within Psyr_0232at 246.894 kb on - strand, within Psyr_0232at 246.894 kb on - strand, within Psyr_0232at 246.920 kb on + strand, within Psyr_0232at 246.921 kb on - strand, within Psyr_0232at 247.026 kb on + strand, within Psyr_0232at 247.026 kb on + strand, within Psyr_0232at 247.026 kb on + strand, within Psyr_0232at 247.027 kb on - strand, within Psyr_0232at 247.027 kb on - strand, within Psyr_0232at 247.027 kb on - strand, within Psyr_0232at 247.107 kb on + strand, within Psyr_0232at 247.107 kb on + strand, within Psyr_0232at 247.108 kb on - strand, within Psyr_0232at 247.108 kb on - strand, within Psyr_0232at 247.110 kb on + strand, within Psyr_0232at 247.110 kb on + strand, within Psyr_0232at 247.111 kb on - strand, within Psyr_0232at 247.137 kb on - strand, within Psyr_0232at 247.137 kb on - strand, within Psyr_0232at 247.203 kb on + strand, within Psyr_0232at 247.203 kb on + strand, within Psyr_0232at 247.203 kb on + strand, within Psyr_0232at 247.203 kb on + strand, within Psyr_0232at 247.203 kb on + strand, within Psyr_0232at 247.204 kb on - strand, within Psyr_0232at 247.204 kb on - strand, within Psyr_0232at 247.204 kb on - strand, within Psyr_0232at 247.204 kb on - strand, within Psyr_0232at 247.204 kb on - strand, within Psyr_0232at 247.204 kb on - strand, within Psyr_0232at 247.204 kb on - strand, within Psyr_0232at 247.204 kb on - strand, within Psyr_0232at 247.204 kb on - strand, within Psyr_0232at 247.257 kb on + strand, within Psyr_0232at 247.257 kb on + strand, within Psyr_0232at 247.310 kb on - strand, within Psyr_0232at 247.461 kb on + strand, within Psyr_0232

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acriflavine 7.75 ug/ml
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245,490 + Psyr_0230 0.46 -0.0
245,490 + Psyr_0230 0.46 +0.3
245,490 + Psyr_0230 0.46 +0.4
245,491 - Psyr_0230 0.46 +0.8
245,491 - Psyr_0230 0.46 -0.4
245,491 - Psyr_0230 0.46 +0.7
245,820 + Psyr_0230 0.69 -0.7
245,820 + Psyr_0230 0.69 -1.0
245,821 - Psyr_0230 0.69 -1.5
245,835 + Psyr_0230 0.70 +0.5
245,995 + Psyr_0230 0.82 +0.8
246,067 - Psyr_0230 0.87 -0.2
246,137 - -0.2
246,137 - -0.2
246,199 - -0.5
246,199 - +0.1
246,199 - +0.1
246,246 + -0.3
246,246 + +2.8
246,246 + +0.6
246,246 + -1.4
246,246 + +0.5
246,247 - +0.8
246,261 + -0.5
246,310 - -1.4
246,311 + -0.0
246,312 - -1.0
246,312 - -0.6
246,312 - -0.2
246,350 + +0.2
246,351 - +0.8
246,562 - Psyr_0231 0.52 -1.0
246,562 - Psyr_0231 0.52 -0.5
246,562 - Psyr_0231 0.52 -1.1
246,876 + Psyr_0232 0.14 +0.4
246,876 + Psyr_0232 0.14 -0.8
246,877 - Psyr_0232 0.15 -0.4
246,877 - Psyr_0232 0.15 -0.2
246,888 + Psyr_0232 0.15 -1.4
246,888 + Psyr_0232 0.15 -0.9
246,888 + Psyr_0232 0.15 +0.2
246,889 - Psyr_0232 0.15 +0.3
246,893 + Psyr_0232 0.16 +0.3
246,893 + Psyr_0232 0.16 -0.5
246,893 + Psyr_0232 0.16 -1.5
246,893 + Psyr_0232 0.16 -0.3
246,893 + Psyr_0232 0.16 -1.0
246,893 + Psyr_0232 0.16 -1.3
246,893 + Psyr_0232 0.16 -2.2
246,894 - Psyr_0232 0.16 +0.8
246,894 - Psyr_0232 0.16 -1.5
246,894 - Psyr_0232 0.16 -0.7
246,894 - Psyr_0232 0.16 -1.1
246,894 - Psyr_0232 0.16 -2.2
246,894 - Psyr_0232 0.16 -1.3
246,894 - Psyr_0232 0.16 -1.7
246,920 + Psyr_0232 0.18 -1.0
246,921 - Psyr_0232 0.18 -2.0
247,026 + Psyr_0232 0.26 -1.7
247,026 + Psyr_0232 0.26 -0.6
247,026 + Psyr_0232 0.26 +0.1
247,027 - Psyr_0232 0.26 +0.2
247,027 - Psyr_0232 0.26 -0.8
247,027 - Psyr_0232 0.26 +0.4
247,107 + Psyr_0232 0.32 +0.3
247,107 + Psyr_0232 0.32 -2.6
247,108 - Psyr_0232 0.32 -0.2
247,108 - Psyr_0232 0.32 -0.3
247,110 + Psyr_0232 0.32 -0.1
247,110 + Psyr_0232 0.32 +0.0
247,111 - Psyr_0232 0.32 +0.1
247,137 - Psyr_0232 0.34 +0.1
247,137 - Psyr_0232 0.34 +0.8
247,203 + Psyr_0232 0.39 +0.6
247,203 + Psyr_0232 0.39 +0.2
247,203 + Psyr_0232 0.39 -1.7
247,203 + Psyr_0232 0.39 +0.5
247,203 + Psyr_0232 0.39 +0.6
247,204 - Psyr_0232 0.39 -2.3
247,204 - Psyr_0232 0.39 +0.4
247,204 - Psyr_0232 0.39 -0.7
247,204 - Psyr_0232 0.39 -0.3
247,204 - Psyr_0232 0.39 -0.2
247,204 - Psyr_0232 0.39 +0.3
247,204 - Psyr_0232 0.39 +0.2
247,204 - Psyr_0232 0.39 +0.6
247,204 - Psyr_0232 0.39 -0.8
247,257 + Psyr_0232 0.43 -0.1
247,257 + Psyr_0232 0.43 -0.2
247,310 - Psyr_0232 0.47 -0.3
247,461 + Psyr_0232 0.59 +0.0

Or see this region's nucleotide sequence