Experiment: D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4395 and Pf1N1B4_4396 are separated by 126 nucleotides Pf1N1B4_4396 and Pf1N1B4_4397 are separated by 18 nucleotides Pf1N1B4_4397 and Pf1N1B4_4398 are separated by 9 nucleotides Pf1N1B4_4398 and Pf1N1B4_4399 are separated by 12 nucleotides
Pf1N1B4_4395 - Transcriptional regulator RpiR in protein degradation cluster, at 4,854,888 to 4,855,796
_4395
Pf1N1B4_4396 - Arginine/ornithine ABC transporter, ATP-binding protein AotP, at 4,855,923 to 4,856,687
_4396
Pf1N1B4_4397 - Succinylglutamate desuccinylase/aspartoacylase, at 4,856,706 to 4,857,818
_4397
Pf1N1B4_4398 - Histidine ABC transporter, permease protein HisM (TC 3.A.1.3.1), at 4,857,828 to 4,858,526
_4398
Pf1N1B4_4399 - Arginine/ornithine ABC transporter, permease protein AotQ, at 4,858,539 to 4,859,231
_4399
Position (kb) 4856
4857
4858 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4856.240 kb on + strand, within Pf1N1B4_4396 at 4856.240 kb on + strand, within Pf1N1B4_4396 at 4856.241 kb on - strand, within Pf1N1B4_4396 at 4856.241 kb on - strand, within Pf1N1B4_4396 at 4856.241 kb on - strand, within Pf1N1B4_4396 at 4856.241 kb on - strand, within Pf1N1B4_4396 at 4856.558 kb on + strand at 4856.558 kb on + strand, within Pf1N1B4_4396 at 4856.558 kb on + strand, within Pf1N1B4_4396 at 4856.558 kb on + strand, within Pf1N1B4_4396 at 4856.658 kb on - strand at 4856.683 kb on + strand at 4856.693 kb on + strand at 4856.804 kb on - strand at 4856.947 kb on + strand at 4857.286 kb on + strand, within Pf1N1B4_4397 at 4857.286 kb on + strand, within Pf1N1B4_4397 at 4857.286 kb on + strand, within Pf1N1B4_4397 at 4857.286 kb on + strand, within Pf1N1B4_4397 at 4857.286 kb on + strand, within Pf1N1B4_4397 at 4857.286 kb on + strand at 4857.287 kb on - strand, within Pf1N1B4_4397 at 4857.287 kb on - strand, within Pf1N1B4_4397 at 4857.287 kb on - strand at 4857.830 kb on - strand at 4857.850 kb on + strand at 4857.913 kb on + strand, within Pf1N1B4_4398 at 4857.913 kb on + strand, within Pf1N1B4_4398 at 4857.948 kb on + strand, within Pf1N1B4_4398 at 4857.952 kb on + strand at 4857.952 kb on + strand, within Pf1N1B4_4398 at 4857.953 kb on - strand, within Pf1N1B4_4398 at 4857.953 kb on - strand, within Pf1N1B4_4398 at 4858.055 kb on - strand, within Pf1N1B4_4398 at 4858.196 kb on - strand, within Pf1N1B4_4398 at 4858.252 kb on + strand at 4858.253 kb on - strand, within Pf1N1B4_4398 at 4858.275 kb on + strand, within Pf1N1B4_4398 at 4858.303 kb on + strand, within Pf1N1B4_4398 at 4858.304 kb on - strand at 4858.348 kb on + strand, within Pf1N1B4_4398 at 4858.348 kb on + strand, within Pf1N1B4_4398 at 4858.352 kb on + strand, within Pf1N1B4_4398 at 4858.354 kb on + strand, within Pf1N1B4_4398 at 4858.354 kb on + strand at 4858.354 kb on + strand, within Pf1N1B4_4398 at 4858.355 kb on - strand, within Pf1N1B4_4398 at 4858.483 kb on + strand at 4858.571 kb on - strand at 4858.625 kb on - strand, within Pf1N1B4_4399
Per-strain Table
Position Strand Gene LocusTag Fraction D-Ribose (C) remove 4,856,240 + Pf1N1B4_4396 0.41 -0.2 4,856,240 + Pf1N1B4_4396 0.41 +0.5 4,856,241 - Pf1N1B4_4396 0.42 +0.9 4,856,241 - Pf1N1B4_4396 0.42 +0.2 4,856,241 - Pf1N1B4_4396 0.42 -1.2 4,856,241 - Pf1N1B4_4396 0.42 -0.8 4,856,558 + -0.1 4,856,558 + Pf1N1B4_4396 0.83 +1.5 4,856,558 + Pf1N1B4_4396 0.83 -0.1 4,856,558 + Pf1N1B4_4396 0.83 -1.9 4,856,658 - +0.9 4,856,683 + -0.5 4,856,693 + -1.9 4,856,804 - +0.2 4,856,947 + +1.5 4,857,286 + Pf1N1B4_4397 0.52 -0.1 4,857,286 + Pf1N1B4_4397 0.52 -0.9 4,857,286 + Pf1N1B4_4397 0.52 -0.3 4,857,286 + Pf1N1B4_4397 0.52 -2.1 4,857,286 + Pf1N1B4_4397 0.52 +0.4 4,857,286 + -0.6 4,857,287 - Pf1N1B4_4397 0.52 -0.1 4,857,287 - Pf1N1B4_4397 0.52 -2.8 4,857,287 - -0.1 4,857,830 - -0.1 4,857,850 + -1.8 4,857,913 + Pf1N1B4_4398 0.12 -0.4 4,857,913 + Pf1N1B4_4398 0.12 -0.8 4,857,948 + Pf1N1B4_4398 0.17 -1.1 4,857,952 + -0.6 4,857,952 + Pf1N1B4_4398 0.18 -0.5 4,857,953 - Pf1N1B4_4398 0.18 -0.2 4,857,953 - Pf1N1B4_4398 0.18 +1.9 4,858,055 - Pf1N1B4_4398 0.32 -0.4 4,858,196 - Pf1N1B4_4398 0.53 +0.4 4,858,252 + -0.1 4,858,253 - Pf1N1B4_4398 0.61 +1.4 4,858,275 + Pf1N1B4_4398 0.64 -0.6 4,858,303 + Pf1N1B4_4398 0.68 -0.6 4,858,304 - -1.4 4,858,348 + Pf1N1B4_4398 0.74 -1.6 4,858,348 + Pf1N1B4_4398 0.74 -2.1 4,858,352 + Pf1N1B4_4398 0.75 -0.6 4,858,354 + Pf1N1B4_4398 0.75 +0.4 4,858,354 + +0.9 4,858,354 + Pf1N1B4_4398 0.75 -0.2 4,858,355 - Pf1N1B4_4398 0.75 +0.2 4,858,483 + -0.9 4,858,571 - -0.4 4,858,625 - Pf1N1B4_4399 0.12 -1.1
Or see this region's nucleotide sequence