Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1354 and EX28DRAFT_1355 overlap by 4 nucleotides EX28DRAFT_1355 and EX28DRAFT_1356 are separated by 75 nucleotides EX28DRAFT_1356 and EX28DRAFT_1357 are separated by 70 nucleotides
EX28DRAFT_1354: EX28DRAFT_1354 - Multidrug resistance efflux pump, at 1,369,541 to 1,370,623
_1354
EX28DRAFT_1355: EX28DRAFT_1355 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 1,370,620 to 1,371,999
_1355
EX28DRAFT_1356: EX28DRAFT_1356 - Predicted O-methyltransferase, at 1,372,075 to 1,372,734
_1356
EX28DRAFT_1357: EX28DRAFT_1357 - RNA helicase HrpA, at 1,372,805 to 1,376,707
_1357
Position (kb) 1370
1371
1372 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 1369.627 kb on + strand at 1369.752 kb on - strand, within EX28DRAFT_1354 at 1369.752 kb on - strand, within EX28DRAFT_1354 at 1369.752 kb on - strand, within EX28DRAFT_1354 at 1369.754 kb on - strand, within EX28DRAFT_1354 at 1369.782 kb on + strand, within EX28DRAFT_1354 at 1369.783 kb on - strand, within EX28DRAFT_1354 at 1369.825 kb on + strand, within EX28DRAFT_1354 at 1369.826 kb on - strand, within EX28DRAFT_1354 at 1369.829 kb on + strand, within EX28DRAFT_1354 at 1369.829 kb on + strand, within EX28DRAFT_1354 at 1369.829 kb on + strand, within EX28DRAFT_1354 at 1369.906 kb on + strand, within EX28DRAFT_1354 at 1369.989 kb on + strand, within EX28DRAFT_1354 at 1370.133 kb on + strand, within EX28DRAFT_1354 at 1370.133 kb on + strand, within EX28DRAFT_1354 at 1370.133 kb on + strand, within EX28DRAFT_1354 at 1370.417 kb on + strand, within EX28DRAFT_1354 at 1370.688 kb on - strand at 1370.688 kb on - strand at 1370.867 kb on - strand, within EX28DRAFT_1355 at 1370.867 kb on - strand, within EX28DRAFT_1355 at 1371.011 kb on - strand, within EX28DRAFT_1355 at 1371.208 kb on - strand, within EX28DRAFT_1355 at 1371.257 kb on + strand, within EX28DRAFT_1355 at 1371.258 kb on - strand, within EX28DRAFT_1355 at 1371.624 kb on + strand, within EX28DRAFT_1355 at 1371.672 kb on + strand, within EX28DRAFT_1355 at 1371.672 kb on + strand, within EX28DRAFT_1355 at 1371.704 kb on - strand, within EX28DRAFT_1355 at 1371.709 kb on + strand, within EX28DRAFT_1355 at 1371.765 kb on + strand, within EX28DRAFT_1355 at 1371.869 kb on - strand at 1371.964 kb on + strand at 1371.965 kb on - strand at 1371.965 kb on - strand at 1371.965 kb on - strand at 1372.101 kb on + strand at 1372.101 kb on + strand at 1372.101 kb on + strand at 1372.102 kb on - strand at 1372.105 kb on + strand at 1372.105 kb on + strand at 1372.106 kb on - strand at 1372.267 kb on - strand, within EX28DRAFT_1356 at 1372.281 kb on + strand, within EX28DRAFT_1356 at 1372.282 kb on - strand, within EX28DRAFT_1356 at 1372.838 kb on - strand at 1372.963 kb on + strand at 1372.963 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 1,369,627 + -2.1 1,369,752 - EX28DRAFT_1354 0.19 -0.3 1,369,752 - EX28DRAFT_1354 0.19 +2.3 1,369,752 - EX28DRAFT_1354 0.19 -0.5 1,369,754 - EX28DRAFT_1354 0.20 -0.4 1,369,782 + EX28DRAFT_1354 0.22 -0.1 1,369,783 - EX28DRAFT_1354 0.22 +0.1 1,369,825 + EX28DRAFT_1354 0.26 +0.4 1,369,826 - EX28DRAFT_1354 0.26 +0.5 1,369,829 + EX28DRAFT_1354 0.27 +0.6 1,369,829 + EX28DRAFT_1354 0.27 +0.1 1,369,829 + EX28DRAFT_1354 0.27 +0.7 1,369,906 + EX28DRAFT_1354 0.34 -0.3 1,369,989 + EX28DRAFT_1354 0.41 +0.4 1,370,133 + EX28DRAFT_1354 0.55 -0.6 1,370,133 + EX28DRAFT_1354 0.55 -0.3 1,370,133 + EX28DRAFT_1354 0.55 +0.1 1,370,417 + EX28DRAFT_1354 0.81 -0.1 1,370,688 - +1.3 1,370,688 - -0.0 1,370,867 - EX28DRAFT_1355 0.18 +0.7 1,370,867 - EX28DRAFT_1355 0.18 -0.1 1,371,011 - EX28DRAFT_1355 0.28 +0.4 1,371,208 - EX28DRAFT_1355 0.43 -2.9 1,371,257 + EX28DRAFT_1355 0.46 -0.3 1,371,258 - EX28DRAFT_1355 0.46 -1.0 1,371,624 + EX28DRAFT_1355 0.73 -0.4 1,371,672 + EX28DRAFT_1355 0.76 -0.9 1,371,672 + EX28DRAFT_1355 0.76 +0.2 1,371,704 - EX28DRAFT_1355 0.79 -1.4 1,371,709 + EX28DRAFT_1355 0.79 +0.2 1,371,765 + EX28DRAFT_1355 0.83 -1.5 1,371,869 - -0.3 1,371,964 + -0.4 1,371,965 - +0.1 1,371,965 - +1.8 1,371,965 - +0.0 1,372,101 + -1.1 1,372,101 + -0.5 1,372,101 + +1.4 1,372,102 - -0.3 1,372,105 + -1.0 1,372,105 + -2.4 1,372,106 - -0.1 1,372,267 - EX28DRAFT_1356 0.29 -0.6 1,372,281 + EX28DRAFT_1356 0.31 +2.7 1,372,282 - EX28DRAFT_1356 0.31 -0.4 1,372,838 - -0.5 1,372,963 + +5.4 1,372,963 + -0.7
Or see this region's nucleotide sequence