Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0385 and EX28DRAFT_0386 are separated by 127 nucleotides EX28DRAFT_0386 and EX28DRAFT_0387 are separated by 415 nucleotides
EX28DRAFT_0385: EX28DRAFT_0385 - FOG: EAL domain, at 358,096 to 359,652
_0385
EX28DRAFT_0386: EX28DRAFT_0386 - Cell wall-associated hydrolases (invasion-associated proteins), at 359,780 to 360,349
_0386
EX28DRAFT_0387: EX28DRAFT_0387 - Membrane-associated phospholipid phosphatase, at 360,765 to 361,490
_0387
Position (kb) 359
360
361 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 358.821 kb on - strand, within EX28DRAFT_0385 at 358.847 kb on - strand, within EX28DRAFT_0385 at 358.876 kb on - strand, within EX28DRAFT_0385 at 358.885 kb on - strand, within EX28DRAFT_0385 at 358.885 kb on - strand, within EX28DRAFT_0385 at 358.886 kb on + strand, within EX28DRAFT_0385 at 358.887 kb on - strand, within EX28DRAFT_0385 at 358.887 kb on - strand, within EX28DRAFT_0385 at 358.889 kb on + strand, within EX28DRAFT_0385 at 358.889 kb on + strand, within EX28DRAFT_0385 at 358.889 kb on + strand, within EX28DRAFT_0385 at 358.890 kb on - strand, within EX28DRAFT_0385 at 358.890 kb on - strand, within EX28DRAFT_0385 at 358.890 kb on - strand, within EX28DRAFT_0385 at 358.982 kb on - strand, within EX28DRAFT_0385 at 359.088 kb on + strand, within EX28DRAFT_0385 at 359.088 kb on + strand, within EX28DRAFT_0385 at 359.314 kb on - strand, within EX28DRAFT_0385 at 359.403 kb on + strand, within EX28DRAFT_0385 at 359.495 kb on + strand, within EX28DRAFT_0385 at 359.495 kb on + strand, within EX28DRAFT_0385 at 359.495 kb on + strand, within EX28DRAFT_0385 at 359.495 kb on + strand, within EX28DRAFT_0385 at 359.495 kb on + strand, within EX28DRAFT_0385 at 359.495 kb on + strand, within EX28DRAFT_0385 at 359.547 kb on - strand at 359.617 kb on + strand at 359.652 kb on + strand at 359.652 kb on + strand at 359.685 kb on + strand at 359.685 kb on + strand at 359.779 kb on - strand at 359.779 kb on - strand at 359.781 kb on + strand at 359.782 kb on - strand at 359.796 kb on - strand at 359.880 kb on - strand, within EX28DRAFT_0386 at 359.880 kb on - strand, within EX28DRAFT_0386 at 359.945 kb on + strand, within EX28DRAFT_0386 at 359.946 kb on - strand, within EX28DRAFT_0386 at 360.003 kb on + strand, within EX28DRAFT_0386 at 360.023 kb on + strand, within EX28DRAFT_0386 at 360.047 kb on - strand, within EX28DRAFT_0386 at 360.053 kb on + strand, within EX28DRAFT_0386 at 360.074 kb on - strand, within EX28DRAFT_0386 at 360.127 kb on - strand, within EX28DRAFT_0386 at 360.137 kb on - strand, within EX28DRAFT_0386 at 360.160 kb on + strand, within EX28DRAFT_0386 at 360.161 kb on - strand, within EX28DRAFT_0386 at 360.165 kb on - strand, within EX28DRAFT_0386 at 360.169 kb on + strand, within EX28DRAFT_0386 at 360.266 kb on - strand, within EX28DRAFT_0386 at 360.268 kb on + strand, within EX28DRAFT_0386 at 360.269 kb on - strand, within EX28DRAFT_0386 at 360.269 kb on - strand, within EX28DRAFT_0386 at 360.269 kb on - strand, within EX28DRAFT_0386 at 360.269 kb on - strand, within EX28DRAFT_0386 at 360.269 kb on - strand, within EX28DRAFT_0386 at 360.319 kb on + strand at 360.320 kb on - strand at 360.322 kb on - strand at 360.385 kb on + strand at 360.386 kb on - strand at 360.393 kb on + strand at 360.393 kb on + strand at 360.421 kb on + strand at 360.499 kb on - strand at 360.499 kb on - strand at 360.596 kb on + strand at 360.767 kb on - strand at 360.774 kb on + strand at 360.819 kb on + strand at 360.820 kb on - strand at 360.999 kb on - strand, within EX28DRAFT_0387 at 361.096 kb on + strand, within EX28DRAFT_0387 at 361.188 kb on + strand, within EX28DRAFT_0387 at 361.188 kb on + strand, within EX28DRAFT_0387 at 361.305 kb on - strand, within EX28DRAFT_0387
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 358,821 - EX28DRAFT_0385 0.47 -0.9 358,847 - EX28DRAFT_0385 0.48 +0.1 358,876 - EX28DRAFT_0385 0.50 +0.2 358,885 - EX28DRAFT_0385 0.51 -0.8 358,885 - EX28DRAFT_0385 0.51 -0.7 358,886 + EX28DRAFT_0385 0.51 -0.0 358,887 - EX28DRAFT_0385 0.51 +1.5 358,887 - EX28DRAFT_0385 0.51 -1.2 358,889 + EX28DRAFT_0385 0.51 -0.1 358,889 + EX28DRAFT_0385 0.51 -0.5 358,889 + EX28DRAFT_0385 0.51 +0.2 358,890 - EX28DRAFT_0385 0.51 +0.4 358,890 - EX28DRAFT_0385 0.51 +0.4 358,890 - EX28DRAFT_0385 0.51 +0.0 358,982 - EX28DRAFT_0385 0.57 +0.6 359,088 + EX28DRAFT_0385 0.64 +0.1 359,088 + EX28DRAFT_0385 0.64 -0.5 359,314 - EX28DRAFT_0385 0.78 -0.9 359,403 + EX28DRAFT_0385 0.84 +0.3 359,495 + EX28DRAFT_0385 0.90 -1.0 359,495 + EX28DRAFT_0385 0.90 -0.1 359,495 + EX28DRAFT_0385 0.90 +0.7 359,495 + EX28DRAFT_0385 0.90 -0.1 359,495 + EX28DRAFT_0385 0.90 +4.9 359,495 + EX28DRAFT_0385 0.90 -1.4 359,547 - +1.7 359,617 + +0.2 359,652 + -1.2 359,652 + +0.8 359,685 + +3.6 359,685 + +0.2 359,779 - -0.1 359,779 - +0.3 359,781 + -0.3 359,782 - +0.0 359,796 - -1.0 359,880 - EX28DRAFT_0386 0.18 -0.9 359,880 - EX28DRAFT_0386 0.18 -0.0 359,945 + EX28DRAFT_0386 0.29 -2.9 359,946 - EX28DRAFT_0386 0.29 -0.5 360,003 + EX28DRAFT_0386 0.39 -0.3 360,023 + EX28DRAFT_0386 0.43 -5.5 360,047 - EX28DRAFT_0386 0.47 -0.2 360,053 + EX28DRAFT_0386 0.48 -3.8 360,074 - EX28DRAFT_0386 0.52 -2.0 360,127 - EX28DRAFT_0386 0.61 +0.1 360,137 - EX28DRAFT_0386 0.63 +0.2 360,160 + EX28DRAFT_0386 0.67 +0.8 360,161 - EX28DRAFT_0386 0.67 -1.1 360,165 - EX28DRAFT_0386 0.68 +2.1 360,169 + EX28DRAFT_0386 0.68 -0.4 360,266 - EX28DRAFT_0386 0.85 -0.1 360,268 + EX28DRAFT_0386 0.86 -3.9 360,269 - EX28DRAFT_0386 0.86 -1.8 360,269 - EX28DRAFT_0386 0.86 -0.0 360,269 - EX28DRAFT_0386 0.86 +0.1 360,269 - EX28DRAFT_0386 0.86 -1.0 360,269 - EX28DRAFT_0386 0.86 -1.4 360,319 + -3.0 360,320 - -0.6 360,322 - +0.3 360,385 + -0.4 360,386 - +0.3 360,393 + +0.2 360,393 + -1.5 360,421 + -0.2 360,499 - +0.1 360,499 - -0.6 360,596 + -1.8 360,767 - -0.8 360,774 + -1.1 360,819 + -0.0 360,820 - +1.3 360,999 - EX28DRAFT_0387 0.32 +0.1 361,096 + EX28DRAFT_0387 0.46 +0.1 361,188 + EX28DRAFT_0387 0.58 +0.7 361,188 + EX28DRAFT_0387 0.58 -1.0 361,305 - EX28DRAFT_0387 0.74 -0.2
Or see this region's nucleotide sequence