Strain Fitness in Variovorax sp. OAS795 around ABID97_RS18910

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS18900 and ABID97_RS18905 are separated by 92 nucleotidesABID97_RS18905 and ABID97_RS18910 are separated by 17 nucleotidesABID97_RS18910 and ABID97_RS18915 are separated by 87 nucleotides ABID97_RS18900: ABID97_RS18900 - Crp/Fnr family transcriptional regulator, at 3,894,174 to 3,894,896 _RS18900 ABID97_RS18905: ABID97_RS18905 - NAD(P)H-binding protein, at 3,894,989 to 3,895,636 _RS18905 ABID97_RS18910: ABID97_RS18910 - NIPSNAP family protein, at 3,895,654 to 3,896,355 _RS18910 ABID97_RS18915: ABID97_RS18915 - zinc-binding dehydrogenase, at 3,896,443 to 3,897,393 _RS18915 Position (kb) 3895 3896 3897Strain fitness (log2 ratio) -1 0 1at 3895.630 kb on + strandat 3895.631 kb on - strandat 3896.184 kb on - strand, within ABID97_RS18910at 3896.333 kb on + strandat 3896.348 kb on + strandat 3896.367 kb on - strandat 3896.410 kb on - strandat 3896.410 kb on - strandat 3896.764 kb on - strand, within ABID97_RS18915at 3897.016 kb on - strand, within ABID97_RS18915at 3897.185 kb on + strand, within ABID97_RS18915at 3897.191 kb on - strand, within ABID97_RS18915at 3897.191 kb on - strand, within ABID97_RS18915

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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3,895,630 + +0.5
3,895,631 - -0.1
3,896,184 - ABID97_RS18910 0.75 +1.2
3,896,333 + -0.5
3,896,348 + +0.6
3,896,367 - +0.8
3,896,410 - +0.1
3,896,410 - -0.1
3,896,764 - ABID97_RS18915 0.34 -0.4
3,897,016 - ABID97_RS18915 0.60 -0.3
3,897,185 + ABID97_RS18915 0.78 -1.4
3,897,191 - ABID97_RS18915 0.79 -0.3
3,897,191 - ABID97_RS18915 0.79 -0.0

Or see this region's nucleotide sequence