Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4025

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4023 and EX28DRAFT_4024 are separated by 197 nucleotidesEX28DRAFT_4024 and EX28DRAFT_4025 are separated by 7 nucleotidesEX28DRAFT_4025 and EX28DRAFT_4026 are separated by 4 nucleotidesEX28DRAFT_4026 and EX28DRAFT_4027 are separated by 27 nucleotides EX28DRAFT_4023: EX28DRAFT_4023 - potassium uptake protein, at 233,986 to 235,854 _4023 EX28DRAFT_4024: EX28DRAFT_4024 - ABC-type ribose transport system, auxiliary component, at 236,052 to 236,471 _4024 EX28DRAFT_4025: EX28DRAFT_4025 - ABC-type sugar transport system, ATPase component, at 236,479 to 237,984 _4025 EX28DRAFT_4026: EX28DRAFT_4026 - Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components, at 237,989 to 238,954 _4026 EX28DRAFT_4027: EX28DRAFT_4027 - ABC-type sugar transport system, periplasmic component, at 238,982 to 239,872 _4027 Position (kb) 236 237 238Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 235.534 kb on + strand, within EX28DRAFT_4023at 235.535 kb on - strand, within EX28DRAFT_4023at 235.696 kb on - strandat 235.736 kb on - strandat 235.759 kb on + strandat 235.759 kb on + strandat 235.759 kb on + strandat 235.852 kb on + strandat 235.853 kb on - strandat 235.921 kb on + strandat 235.922 kb on - strandat 236.213 kb on - strand, within EX28DRAFT_4024at 236.279 kb on + strand, within EX28DRAFT_4024at 236.279 kb on + strand, within EX28DRAFT_4024at 236.280 kb on - strand, within EX28DRAFT_4024at 236.312 kb on + strand, within EX28DRAFT_4024at 236.347 kb on + strand, within EX28DRAFT_4024at 236.347 kb on + strand, within EX28DRAFT_4024at 236.348 kb on - strand, within EX28DRAFT_4024at 236.441 kb on + strandat 236.511 kb on + strandat 236.512 kb on - strandat 236.638 kb on + strand, within EX28DRAFT_4025at 236.639 kb on - strand, within EX28DRAFT_4025at 236.728 kb on - strand, within EX28DRAFT_4025at 236.833 kb on + strand, within EX28DRAFT_4025at 236.833 kb on + strand, within EX28DRAFT_4025at 236.834 kb on - strand, within EX28DRAFT_4025at 236.834 kb on - strand, within EX28DRAFT_4025at 236.834 kb on - strand, within EX28DRAFT_4025at 236.877 kb on + strand, within EX28DRAFT_4025at 236.877 kb on + strand, within EX28DRAFT_4025at 237.064 kb on + strand, within EX28DRAFT_4025at 237.064 kb on + strand, within EX28DRAFT_4025at 237.065 kb on - strand, within EX28DRAFT_4025at 237.065 kb on - strand, within EX28DRAFT_4025at 237.065 kb on - strand, within EX28DRAFT_4025at 237.135 kb on + strand, within EX28DRAFT_4025at 237.172 kb on - strand, within EX28DRAFT_4025at 237.172 kb on - strand, within EX28DRAFT_4025at 237.172 kb on - strand, within EX28DRAFT_4025at 237.469 kb on + strand, within EX28DRAFT_4025at 237.469 kb on + strand, within EX28DRAFT_4025at 237.469 kb on + strand, within EX28DRAFT_4025at 237.469 kb on + strand, within EX28DRAFT_4025at 237.470 kb on - strand, within EX28DRAFT_4025at 237.470 kb on - strand, within EX28DRAFT_4025at 237.550 kb on + strand, within EX28DRAFT_4025at 237.582 kb on + strand, within EX28DRAFT_4025at 237.583 kb on - strand, within EX28DRAFT_4025at 237.781 kb on + strand, within EX28DRAFT_4025at 237.782 kb on - strand, within EX28DRAFT_4025at 237.784 kb on - strand, within EX28DRAFT_4025at 237.851 kb on + strandat 237.854 kb on + strandat 237.854 kb on + strandat 237.855 kb on - strandat 237.982 kb on + strandat 237.983 kb on - strandat 237.983 kb on - strandat 237.994 kb on + strandat 238.020 kb on - strandat 238.020 kb on - strandat 238.121 kb on - strand, within EX28DRAFT_4026at 238.121 kb on - strand, within EX28DRAFT_4026at 238.528 kb on + strand, within EX28DRAFT_4026at 238.529 kb on - strand, within EX28DRAFT_4026at 238.551 kb on - strand, within EX28DRAFT_4026at 238.551 kb on - strand, within EX28DRAFT_4026at 238.551 kb on - strand, within EX28DRAFT_4026at 238.551 kb on - strand, within EX28DRAFT_4026at 238.580 kb on + strand, within EX28DRAFT_4026at 238.582 kb on + strand, within EX28DRAFT_4026at 238.582 kb on + strand, within EX28DRAFT_4026at 238.582 kb on + strand, within EX28DRAFT_4026at 238.582 kb on + strand, within EX28DRAFT_4026at 238.583 kb on - strand, within EX28DRAFT_4026at 238.583 kb on - strand, within EX28DRAFT_4026at 238.583 kb on - strand, within EX28DRAFT_4026at 238.583 kb on - strand, within EX28DRAFT_4026at 238.583 kb on - strand, within EX28DRAFT_4026at 238.586 kb on + strand, within EX28DRAFT_4026at 238.587 kb on - strand, within EX28DRAFT_4026at 238.587 kb on - strand, within EX28DRAFT_4026at 238.587 kb on - strand, within EX28DRAFT_4026at 238.640 kb on - strand, within EX28DRAFT_4026at 238.640 kb on - strand, within EX28DRAFT_4026at 238.640 kb on - strand, within EX28DRAFT_4026at 238.652 kb on - strand, within EX28DRAFT_4026at 238.658 kb on + strand, within EX28DRAFT_4026at 238.659 kb on - strand, within EX28DRAFT_4026at 238.745 kb on + strand, within EX28DRAFT_4026at 238.873 kb on - strandat 238.886 kb on + strandat 238.935 kb on + strandat 238.965 kb on + strandat 238.977 kb on + strandat 238.977 kb on + strandat 238.977 kb on + strandat 238.977 kb on + strandat 238.977 kb on + strandat 238.977 kb on + strandat 238.977 kb on + strandat 238.978 kb on - strandat 238.978 kb on - strandat 238.978 kb on - strandat 238.978 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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235,534 + EX28DRAFT_4023 0.83 +0.9
235,535 - EX28DRAFT_4023 0.83 -4.9
235,696 - +0.1
235,736 - -3.5
235,759 + -0.4
235,759 + +0.7
235,759 + +0.0
235,852 + -0.2
235,853 - +0.7
235,921 + -1.4
235,922 - +2.0
236,213 - EX28DRAFT_4024 0.38 +0.9
236,279 + EX28DRAFT_4024 0.54 -0.6
236,279 + EX28DRAFT_4024 0.54 +0.2
236,280 - EX28DRAFT_4024 0.54 +0.8
236,312 + EX28DRAFT_4024 0.62 -1.2
236,347 + EX28DRAFT_4024 0.70 +0.2
236,347 + EX28DRAFT_4024 0.70 +0.5
236,348 - EX28DRAFT_4024 0.70 +1.4
236,441 + -1.0
236,511 + +0.1
236,512 - +2.6
236,638 + EX28DRAFT_4025 0.11 -0.5
236,639 - EX28DRAFT_4025 0.11 +1.6
236,728 - EX28DRAFT_4025 0.17 +0.1
236,833 + EX28DRAFT_4025 0.24 +0.2
236,833 + EX28DRAFT_4025 0.24 +0.4
236,834 - EX28DRAFT_4025 0.24 -1.2
236,834 - EX28DRAFT_4025 0.24 +0.8
236,834 - EX28DRAFT_4025 0.24 -0.5
236,877 + EX28DRAFT_4025 0.26 -1.4
236,877 + EX28DRAFT_4025 0.26 +0.4
237,064 + EX28DRAFT_4025 0.39 -0.8
237,064 + EX28DRAFT_4025 0.39 +0.7
237,065 - EX28DRAFT_4025 0.39 +0.3
237,065 - EX28DRAFT_4025 0.39 -3.3
237,065 - EX28DRAFT_4025 0.39 +0.2
237,135 + EX28DRAFT_4025 0.44 +2.8
237,172 - EX28DRAFT_4025 0.46 -0.2
237,172 - EX28DRAFT_4025 0.46 +1.9
237,172 - EX28DRAFT_4025 0.46 -0.3
237,469 + EX28DRAFT_4025 0.66 -3.8
237,469 + EX28DRAFT_4025 0.66 -0.4
237,469 + EX28DRAFT_4025 0.66 -1.2
237,469 + EX28DRAFT_4025 0.66 +0.0
237,470 - EX28DRAFT_4025 0.66 +0.8
237,470 - EX28DRAFT_4025 0.66 -0.7
237,550 + EX28DRAFT_4025 0.71 +0.8
237,582 + EX28DRAFT_4025 0.73 +0.2
237,583 - EX28DRAFT_4025 0.73 -0.1
237,781 + EX28DRAFT_4025 0.86 +0.5
237,782 - EX28DRAFT_4025 0.87 +0.9
237,784 - EX28DRAFT_4025 0.87 +0.5
237,851 + -0.6
237,854 + +0.1
237,854 + +0.3
237,855 - -0.2
237,982 + +0.3
237,983 - -2.3
237,983 - +0.0
237,994 + -0.3
238,020 - +0.3
238,020 - -0.4
238,121 - EX28DRAFT_4026 0.14 +0.9
238,121 - EX28DRAFT_4026 0.14 +0.5
238,528 + EX28DRAFT_4026 0.56 -0.4
238,529 - EX28DRAFT_4026 0.56 -2.9
238,551 - EX28DRAFT_4026 0.58 -0.4
238,551 - EX28DRAFT_4026 0.58 -0.9
238,551 - EX28DRAFT_4026 0.58 +1.5
238,551 - EX28DRAFT_4026 0.58 -0.1
238,580 + EX28DRAFT_4026 0.61 +0.2
238,582 + EX28DRAFT_4026 0.61 -0.4
238,582 + EX28DRAFT_4026 0.61 +0.5
238,582 + EX28DRAFT_4026 0.61 -0.0
238,582 + EX28DRAFT_4026 0.61 +0.3
238,583 - EX28DRAFT_4026 0.61 +0.4
238,583 - EX28DRAFT_4026 0.61 +1.0
238,583 - EX28DRAFT_4026 0.61 -0.3
238,583 - EX28DRAFT_4026 0.61 +0.9
238,583 - EX28DRAFT_4026 0.61 -0.8
238,586 + EX28DRAFT_4026 0.62 -1.3
238,587 - EX28DRAFT_4026 0.62 -0.1
238,587 - EX28DRAFT_4026 0.62 -4.5
238,587 - EX28DRAFT_4026 0.62 -0.0
238,640 - EX28DRAFT_4026 0.67 -0.0
238,640 - EX28DRAFT_4026 0.67 -0.0
238,640 - EX28DRAFT_4026 0.67 +0.5
238,652 - EX28DRAFT_4026 0.69 -0.1
238,658 + EX28DRAFT_4026 0.69 -0.5
238,659 - EX28DRAFT_4026 0.69 +0.6
238,745 + EX28DRAFT_4026 0.78 +1.1
238,873 - +0.1
238,886 + -2.2
238,935 + +1.1
238,965 + -0.5
238,977 + -0.2
238,977 + +0.3
238,977 + -1.7
238,977 + +0.5
238,977 + -0.0
238,977 + -0.6
238,977 + +0.9
238,978 - +0.4
238,978 - -0.3
238,978 - -0.4
238,978 - -0.4

Or see this region's nucleotide sequence