Strain Fitness in Pseudomonas sp. S08-1 around OH686_01960

Experiment: Sorgoleone (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_01955 and OH686_01960 are separated by 187 nucleotidesOH686_01960 and OH686_01965 are separated by 68 nucleotides OH686_01955: OH686_01955 - Succinyl-CoA ligase [ADP-forming] beta chain , at 418,573 to 419,739 _01955 OH686_01960: OH686_01960 - dihydrolipoyl dehydrogenase, at 419,927 to 421,363 _01960 OH686_01965: OH686_01965 - dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex, at 421,432 to 422,652 _01965 Position (kb) 419 420 421 422Strain fitness (log2 ratio) -1 0 1at 419.762 kb on - strandat 419.762 kb on - strandat 421.383 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sorgoleone (C)
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419,762 - +0.1
419,762 - +1.4
421,383 - +0.4

Or see this region's nucleotide sequence