Experiment: Pectic galactan from potato 5mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15930 and HMPREF1058_RS15925 are separated by 5 nucleotides HMPREF1058_RS15925 and HMPREF1058_RS15920 are separated by 221 nucleotides HMPREF1058_RS15920 and HMPREF1058_RS15915 are separated by 22 nucleotides
HMPREF1058_RS15930: HMPREF1058_RS15930 - endonuclease, at 806,067 to 807,077
_RS15930
HMPREF1058_RS15925: HMPREF1058_RS15925 - aminoacyl-histidine dipeptidase, at 807,083 to 808,540
_RS15925
HMPREF1058_RS15920: HMPREF1058_RS15920 - hypothetical protein, at 808,762 to 808,989
_RS15920
HMPREF1058_RS15915: HMPREF1058_RS15915 - OmpH family outer membrane protein, at 809,012 to 809,626
_RS15915
Position (kb) 807
808
809 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 806.100 kb on + strand at 806.125 kb on + strand at 806.203 kb on - strand, within HMPREF1058_RS15930 at 806.203 kb on - strand, within HMPREF1058_RS15930 at 806.234 kb on + strand, within HMPREF1058_RS15930 at 806.237 kb on + strand, within HMPREF1058_RS15930 at 806.238 kb on - strand, within HMPREF1058_RS15930 at 806.238 kb on - strand, within HMPREF1058_RS15930 at 806.308 kb on + strand, within HMPREF1058_RS15930 at 806.341 kb on + strand, within HMPREF1058_RS15930 at 806.359 kb on - strand, within HMPREF1058_RS15930 at 806.359 kb on - strand, within HMPREF1058_RS15930 at 806.394 kb on - strand, within HMPREF1058_RS15930 at 806.406 kb on - strand, within HMPREF1058_RS15930 at 806.645 kb on + strand, within HMPREF1058_RS15930 at 806.646 kb on - strand, within HMPREF1058_RS15930 at 806.646 kb on - strand, within HMPREF1058_RS15930 at 806.648 kb on - strand, within HMPREF1058_RS15930 at 806.698 kb on + strand, within HMPREF1058_RS15930 at 806.698 kb on + strand, within HMPREF1058_RS15930 at 806.877 kb on + strand, within HMPREF1058_RS15930 at 806.877 kb on + strand, within HMPREF1058_RS15930 at 806.993 kb on + strand at 806.995 kb on + strand at 807.085 kb on - strand at 807.096 kb on - strand at 807.097 kb on + strand at 807.108 kb on - strand at 807.108 kb on - strand at 807.108 kb on - strand at 807.134 kb on - strand at 807.138 kb on - strand at 807.142 kb on + strand at 807.142 kb on + strand at 807.143 kb on - strand at 807.187 kb on + strand at 807.188 kb on - strand at 807.188 kb on - strand at 807.518 kb on + strand, within HMPREF1058_RS15925 at 807.519 kb on - strand, within HMPREF1058_RS15925 at 807.549 kb on + strand, within HMPREF1058_RS15925 at 807.605 kb on - strand, within HMPREF1058_RS15925 at 807.609 kb on - strand, within HMPREF1058_RS15925 at 807.696 kb on + strand, within HMPREF1058_RS15925 at 807.696 kb on + strand, within HMPREF1058_RS15925 at 807.696 kb on + strand, within HMPREF1058_RS15925 at 807.697 kb on - strand, within HMPREF1058_RS15925 at 807.736 kb on + strand, within HMPREF1058_RS15925 at 807.818 kb on - strand, within HMPREF1058_RS15925 at 807.820 kb on - strand, within HMPREF1058_RS15925 at 807.823 kb on + strand, within HMPREF1058_RS15925 at 807.881 kb on - strand, within HMPREF1058_RS15925 at 807.886 kb on + strand, within HMPREF1058_RS15925 at 807.970 kb on - strand, within HMPREF1058_RS15925 at 807.988 kb on + strand, within HMPREF1058_RS15925 at 808.172 kb on + strand, within HMPREF1058_RS15925 at 808.172 kb on + strand, within HMPREF1058_RS15925 at 808.213 kb on + strand, within HMPREF1058_RS15925 at 808.214 kb on - strand, within HMPREF1058_RS15925 at 808.216 kb on + strand, within HMPREF1058_RS15925 at 808.309 kb on + strand, within HMPREF1058_RS15925 at 808.313 kb on + strand, within HMPREF1058_RS15925 at 808.314 kb on - strand, within HMPREF1058_RS15925 at 808.315 kb on + strand, within HMPREF1058_RS15925 at 808.316 kb on - strand, within HMPREF1058_RS15925 at 808.372 kb on + strand, within HMPREF1058_RS15925 at 808.483 kb on + strand at 808.483 kb on + strand at 808.483 kb on + strand at 808.483 kb on + strand at 808.483 kb on + strand at 808.483 kb on + strand at 808.483 kb on + strand at 808.484 kb on - strand at 808.484 kb on - strand at 808.484 kb on - strand at 808.488 kb on - strand at 808.524 kb on - strand at 808.540 kb on + strand at 808.540 kb on + strand at 808.541 kb on - strand at 808.603 kb on - strand at 808.603 kb on - strand at 808.607 kb on - strand at 808.665 kb on - strand at 808.770 kb on + strand at 808.781 kb on + strand at 808.781 kb on + strand at 808.782 kb on - strand at 808.836 kb on - strand, within HMPREF1058_RS15920 at 808.872 kb on + strand, within HMPREF1058_RS15920 at 808.895 kb on + strand, within HMPREF1058_RS15920 at 808.896 kb on - strand, within HMPREF1058_RS15920 at 808.983 kb on + strand at 808.984 kb on - strand at 808.987 kb on + strand at 809.052 kb on + strand at 809.158 kb on - strand, within HMPREF1058_RS15915 at 809.163 kb on - strand, within HMPREF1058_RS15915 at 809.188 kb on + strand, within HMPREF1058_RS15915 at 809.257 kb on - strand, within HMPREF1058_RS15915 at 809.521 kb on + strand, within HMPREF1058_RS15915 at 809.521 kb on + strand, within HMPREF1058_RS15915 at 809.521 kb on + strand, within HMPREF1058_RS15915
Per-strain Table
Position Strand Gene LocusTag Fraction Pectic galactan from potato 5mg/ml (C) remove 806,100 + -0.2 806,125 + +0.1 806,203 - HMPREF1058_RS15930 0.13 -0.9 806,203 - HMPREF1058_RS15930 0.13 -1.5 806,234 + HMPREF1058_RS15930 0.17 -0.9 806,237 + HMPREF1058_RS15930 0.17 -0.6 806,238 - HMPREF1058_RS15930 0.17 +0.1 806,238 - HMPREF1058_RS15930 0.17 -0.9 806,308 + HMPREF1058_RS15930 0.24 -0.7 806,341 + HMPREF1058_RS15930 0.27 -0.1 806,359 - HMPREF1058_RS15930 0.29 -1.2 806,359 - HMPREF1058_RS15930 0.29 -0.8 806,394 - HMPREF1058_RS15930 0.32 -2.5 806,406 - HMPREF1058_RS15930 0.34 -0.9 806,645 + HMPREF1058_RS15930 0.57 -0.8 806,646 - HMPREF1058_RS15930 0.57 -0.2 806,646 - HMPREF1058_RS15930 0.57 -0.3 806,648 - HMPREF1058_RS15930 0.57 -0.4 806,698 + HMPREF1058_RS15930 0.62 +0.7 806,698 + HMPREF1058_RS15930 0.62 +0.1 806,877 + HMPREF1058_RS15930 0.80 -0.6 806,877 + HMPREF1058_RS15930 0.80 -0.8 806,993 + -1.2 806,995 + -1.3 807,085 - -0.0 807,096 - -0.9 807,097 + -1.4 807,108 - -1.1 807,108 - -0.6 807,108 - -0.5 807,134 - +0.3 807,138 - -1.0 807,142 + -1.0 807,142 + -1.2 807,143 - -0.2 807,187 + -0.6 807,188 - -0.6 807,188 - -0.5 807,518 + HMPREF1058_RS15925 0.30 -0.9 807,519 - HMPREF1058_RS15925 0.30 -0.0 807,549 + HMPREF1058_RS15925 0.32 -0.1 807,605 - HMPREF1058_RS15925 0.36 -1.2 807,609 - HMPREF1058_RS15925 0.36 -1.1 807,696 + HMPREF1058_RS15925 0.42 -0.7 807,696 + HMPREF1058_RS15925 0.42 +0.0 807,696 + HMPREF1058_RS15925 0.42 -2.0 807,697 - HMPREF1058_RS15925 0.42 +0.8 807,736 + HMPREF1058_RS15925 0.45 +0.3 807,818 - HMPREF1058_RS15925 0.50 +0.6 807,820 - HMPREF1058_RS15925 0.51 -0.1 807,823 + HMPREF1058_RS15925 0.51 -1.7 807,881 - HMPREF1058_RS15925 0.55 -0.7 807,886 + HMPREF1058_RS15925 0.55 -0.7 807,970 - HMPREF1058_RS15925 0.61 -0.8 807,988 + HMPREF1058_RS15925 0.62 -1.4 808,172 + HMPREF1058_RS15925 0.75 -0.9 808,172 + HMPREF1058_RS15925 0.75 -1.4 808,213 + HMPREF1058_RS15925 0.78 -2.2 808,214 - HMPREF1058_RS15925 0.78 -1.3 808,216 + HMPREF1058_RS15925 0.78 -1.5 808,309 + HMPREF1058_RS15925 0.84 -1.5 808,313 + HMPREF1058_RS15925 0.84 -0.6 808,314 - HMPREF1058_RS15925 0.84 +0.5 808,315 + HMPREF1058_RS15925 0.84 -0.6 808,316 - HMPREF1058_RS15925 0.85 -0.6 808,372 + HMPREF1058_RS15925 0.88 -1.7 808,483 + -3.1 808,483 + -1.5 808,483 + -1.1 808,483 + -1.2 808,483 + -0.5 808,483 + -1.1 808,483 + -0.2 808,484 - +0.8 808,484 - +1.8 808,484 - -0.3 808,488 - -0.3 808,524 - -1.6 808,540 + -0.7 808,540 + -0.7 808,541 - -0.2 808,603 - +0.8 808,603 - -1.4 808,607 - -1.5 808,665 - -0.1 808,770 + -0.2 808,781 + +1.4 808,781 + -1.2 808,782 - +1.8 808,836 - HMPREF1058_RS15920 0.32 -2.0 808,872 + HMPREF1058_RS15920 0.48 +0.5 808,895 + HMPREF1058_RS15920 0.58 -1.2 808,896 - HMPREF1058_RS15920 0.59 -1.6 808,983 + +0.2 808,984 - -1.5 808,987 + +0.0 809,052 + -1.5 809,158 - HMPREF1058_RS15915 0.24 -0.2 809,163 - HMPREF1058_RS15915 0.25 -1.6 809,188 + HMPREF1058_RS15915 0.29 +0.8 809,257 - HMPREF1058_RS15915 0.40 -2.2 809,521 + HMPREF1058_RS15915 0.83 -0.8 809,521 + HMPREF1058_RS15915 0.83 -1.6 809,521 + HMPREF1058_RS15915 0.83 -0.6
Or see this region's nucleotide sequence