Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1707 and EX28DRAFT_1708 are separated by 140 nucleotides EX28DRAFT_1708 and EX28DRAFT_1709 are separated by 2 nucleotides EX28DRAFT_1709 and EX28DRAFT_1710 are separated by 9 nucleotides
EX28DRAFT_1707: EX28DRAFT_1707 - Transcriptional regulator, at 1,723,606 to 1,724,508
_1707
EX28DRAFT_1708: EX28DRAFT_1708 - 3-oxoacid CoA-transferase, A subunit, at 1,724,649 to 1,725,356
_1708
EX28DRAFT_1709: EX28DRAFT_1709 - 3-oxoacid CoA-transferase, B subunit, at 1,725,359 to 1,726,015
_1709
EX28DRAFT_1710: EX28DRAFT_1710 - acetyl-CoA acetyltransferases, at 1,726,025 to 1,727,206
_1710
Position (kb) 1724
1725
1726 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1723.669 kb on - strand at 1723.680 kb on + strand at 1723.680 kb on + strand at 1723.680 kb on + strand at 1723.680 kb on + strand at 1723.681 kb on - strand at 1723.738 kb on - strand, within EX28DRAFT_1707 at 1724.173 kb on + strand, within EX28DRAFT_1707 at 1724.173 kb on + strand, within EX28DRAFT_1707 at 1724.173 kb on + strand, within EX28DRAFT_1707 at 1724.244 kb on + strand, within EX28DRAFT_1707 at 1724.467 kb on + strand at 1724.663 kb on + strand at 1724.948 kb on + strand, within EX28DRAFT_1708 at 1724.948 kb on + strand, within EX28DRAFT_1708 at 1725.078 kb on + strand, within EX28DRAFT_1708 at 1725.078 kb on + strand, within EX28DRAFT_1708 at 1725.079 kb on - strand, within EX28DRAFT_1708 at 1725.269 kb on + strand, within EX28DRAFT_1708 at 1725.283 kb on - strand, within EX28DRAFT_1708 at 1725.363 kb on + strand at 1725.414 kb on - strand at 1725.416 kb on + strand at 1725.459 kb on - strand, within EX28DRAFT_1709 at 1725.857 kb on - strand, within EX28DRAFT_1709 at 1725.923 kb on + strand, within EX28DRAFT_1709 at 1725.924 kb on - strand, within EX28DRAFT_1709 at 1726.167 kb on + strand, within EX28DRAFT_1710 at 1726.168 kb on - strand, within EX28DRAFT_1710 at 1726.168 kb on - strand, within EX28DRAFT_1710 at 1726.300 kb on - strand, within EX28DRAFT_1710
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 1,723,669 - -0.7 1,723,680 + -2.2 1,723,680 + -0.8 1,723,680 + -0.2 1,723,680 + +0.7 1,723,681 - -0.4 1,723,738 - EX28DRAFT_1707 0.15 +0.4 1,724,173 + EX28DRAFT_1707 0.63 -0.6 1,724,173 + EX28DRAFT_1707 0.63 -1.1 1,724,173 + EX28DRAFT_1707 0.63 -1.4 1,724,244 + EX28DRAFT_1707 0.71 -0.6 1,724,467 + -1.9 1,724,663 + +0.9 1,724,948 + EX28DRAFT_1708 0.42 -1.4 1,724,948 + EX28DRAFT_1708 0.42 +0.1 1,725,078 + EX28DRAFT_1708 0.61 -2.0 1,725,078 + EX28DRAFT_1708 0.61 -2.2 1,725,079 - EX28DRAFT_1708 0.61 -0.3 1,725,269 + EX28DRAFT_1708 0.88 +2.3 1,725,283 - EX28DRAFT_1708 0.90 -2.2 1,725,363 + -0.2 1,725,414 - -0.3 1,725,416 + +0.4 1,725,459 - EX28DRAFT_1709 0.15 +1.4 1,725,857 - EX28DRAFT_1709 0.76 -1.2 1,725,923 + EX28DRAFT_1709 0.86 -1.6 1,725,924 - EX28DRAFT_1709 0.86 -0.8 1,726,167 + EX28DRAFT_1710 0.12 -1.9 1,726,168 - EX28DRAFT_1710 0.12 +1.0 1,726,168 - EX28DRAFT_1710 0.12 +1.0 1,726,300 - EX28DRAFT_1710 0.23 +0.8
Or see this region's nucleotide sequence