Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13515

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13510 and ABID97_RS13515 overlap by 4 nucleotidesABID97_RS13515 and ABID97_RS13520 are separated by 6 nucleotides ABID97_RS13510: ABID97_RS13510 - NAD-dependent succinate-semialdehyde dehydrogenase, at 2,810,800 to 2,812,275 _RS13510 ABID97_RS13515: ABID97_RS13515 - MMPL family transporter, at 2,812,272 to 2,814,680 _RS13515 ABID97_RS13520: ABID97_RS13520 - YCF48-related protein, at 2,814,687 to 2,815,730 _RS13520 Position (kb) 2812 2813 2814 2815Strain fitness (log2 ratio) -1 0 1at 2812.057 kb on + strand, within ABID97_RS13510at 2812.585 kb on + strand, within ABID97_RS13515at 2812.586 kb on - strand, within ABID97_RS13515at 2812.953 kb on + strand, within ABID97_RS13515at 2812.957 kb on + strand, within ABID97_RS13515at 2812.958 kb on - strand, within ABID97_RS13515at 2813.112 kb on - strand, within ABID97_RS13515at 2813.512 kb on - strand, within ABID97_RS13515at 2813.512 kb on - strand, within ABID97_RS13515at 2813.905 kb on + strand, within ABID97_RS13515at 2814.011 kb on + strand, within ABID97_RS13515at 2814.012 kb on - strand, within ABID97_RS13515at 2814.080 kb on - strand, within ABID97_RS13515at 2814.125 kb on - strand, within ABID97_RS13515at 2814.466 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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2,812,057 + ABID97_RS13510 0.85 -0.1
2,812,585 + ABID97_RS13515 0.13 -0.7
2,812,586 - ABID97_RS13515 0.13 -0.3
2,812,953 + ABID97_RS13515 0.28 +0.4
2,812,957 + ABID97_RS13515 0.28 -0.2
2,812,958 - ABID97_RS13515 0.28 -0.8
2,813,112 - ABID97_RS13515 0.35 +0.3
2,813,512 - ABID97_RS13515 0.51 -0.0
2,813,512 - ABID97_RS13515 0.51 +0.0
2,813,905 + ABID97_RS13515 0.68 -0.2
2,814,011 + ABID97_RS13515 0.72 -0.1
2,814,012 - ABID97_RS13515 0.72 -0.2
2,814,080 - ABID97_RS13515 0.75 -0.7
2,814,125 - ABID97_RS13515 0.77 +0.2
2,814,466 + -0.3

Or see this region's nucleotide sequence