Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4668

Experiment: KB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_4667 and Psyr_4668 are separated by 15 nucleotides Psyr_4667: Psyr_4667 - Tryptophan 2-monooxygenase, at 5,531,014 to 5,532,693 _4667 Psyr_4668: Psyr_4668 - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase, at 5,532,709 to 5,533,503 _4668 Position (kb) 5532 5533 5534Strain fitness (log2 ratio) -2 -1 0 1 2at 5531.980 kb on + strand, within Psyr_4667at 5531.981 kb on - strand, within Psyr_4667at 5532.089 kb on - strand, within Psyr_4667at 5532.089 kb on - strand, within Psyr_4667at 5532.208 kb on + strand, within Psyr_4667at 5532.208 kb on + strand, within Psyr_4667at 5532.208 kb on + strand, within Psyr_4667at 5532.208 kb on + strand, within Psyr_4667at 5532.208 kb on + strand, within Psyr_4667at 5532.208 kb on + strand, within Psyr_4667at 5532.209 kb on - strand, within Psyr_4667at 5532.209 kb on - strand, within Psyr_4667at 5532.209 kb on - strand, within Psyr_4667at 5532.209 kb on - strand, within Psyr_4667at 5532.209 kb on - strand, within Psyr_4667at 5532.209 kb on - strand, within Psyr_4667at 5532.209 kb on - strand, within Psyr_4667at 5532.209 kb on - strand, within Psyr_4667at 5532.257 kb on - strand, within Psyr_4667at 5532.317 kb on + strand, within Psyr_4667at 5532.317 kb on + strand, within Psyr_4667at 5532.318 kb on - strand, within Psyr_4667at 5532.318 kb on - strand, within Psyr_4667at 5532.318 kb on - strand, within Psyr_4667at 5532.343 kb on + strand, within Psyr_4667at 5532.387 kb on + strand, within Psyr_4667at 5532.458 kb on - strand, within Psyr_4667at 5532.458 kb on - strand, within Psyr_4667at 5532.472 kb on + strand, within Psyr_4667at 5532.473 kb on - strand, within Psyr_4667at 5532.473 kb on - strand, within Psyr_4667at 5532.473 kb on - strand, within Psyr_4667at 5532.473 kb on - strand, within Psyr_4667at 5532.473 kb on - strand, within Psyr_4667at 5532.496 kb on - strand, within Psyr_4667at 5532.724 kb on + strandat 5532.725 kb on - strandat 5532.848 kb on - strand, within Psyr_4668at 5532.953 kb on - strand, within Psyr_4668at 5532.988 kb on + strand, within Psyr_4668at 5532.988 kb on + strand, within Psyr_4668at 5532.988 kb on + strand, within Psyr_4668at 5532.988 kb on + strand, within Psyr_4668at 5532.988 kb on + strand, within Psyr_4668at 5532.988 kb on + strand, within Psyr_4668at 5532.989 kb on - strand, within Psyr_4668at 5532.989 kb on - strand, within Psyr_4668at 5532.989 kb on - strand, within Psyr_4668at 5532.989 kb on - strand, within Psyr_4668at 5532.989 kb on - strand, within Psyr_4668at 5532.989 kb on - strand, within Psyr_4668at 5533.036 kb on + strand, within Psyr_4668at 5533.037 kb on - strand, within Psyr_4668at 5533.170 kb on + strand, within Psyr_4668at 5533.235 kb on - strand, within Psyr_4668at 5533.288 kb on + strand, within Psyr_4668at 5533.288 kb on + strand, within Psyr_4668at 5533.288 kb on + strand, within Psyr_4668at 5533.289 kb on - strand, within Psyr_4668at 5533.289 kb on - strand, within Psyr_4668at 5533.298 kb on - strand, within Psyr_4668at 5533.306 kb on + strand, within Psyr_4668at 5533.306 kb on + strand, within Psyr_4668at 5533.306 kb on + strand, within Psyr_4668at 5533.306 kb on + strand, within Psyr_4668at 5533.307 kb on - strand, within Psyr_4668at 5533.307 kb on - strand, within Psyr_4668at 5533.307 kb on - strand, within Psyr_4668at 5533.307 kb on - strand, within Psyr_4668at 5533.333 kb on + strand, within Psyr_4668at 5533.459 kb on + strandat 5533.459 kb on + strandat 5533.460 kb on - strandat 5533.460 kb on - strandat 5533.486 kb on + strandat 5533.486 kb on + strandat 5533.487 kb on - strandat 5533.488 kb on + strandat 5533.488 kb on + strandat 5533.488 kb on + strandat 5533.488 kb on + strandat 5533.488 kb on + strandat 5533.488 kb on + strandat 5533.488 kb on + strandat 5533.489 kb on - strandat 5533.489 kb on - strandat 5533.489 kb on - strandat 5533.522 kb on + strandat 5533.523 kb on - strandat 5533.548 kb on + strandat 5533.549 kb on - strandat 5533.554 kb on + strandat 5533.554 kb on + strandat 5533.554 kb on + strandat 5533.554 kb on + strandat 5533.554 kb on + strandat 5533.554 kb on + strandat 5533.554 kb on + strandat 5533.554 kb on + strandat 5533.554 kb on + strandat 5533.555 kb on - strandat 5533.555 kb on - strandat 5533.555 kb on - strandat 5533.555 kb on - strandat 5533.556 kb on + strandat 5533.557 kb on - strandat 5533.557 kb on - strandat 5533.557 kb on - strandat 5533.557 kb on - strandat 5533.560 kb on + strandat 5533.560 kb on + strandat 5533.560 kb on + strandat 5533.560 kb on + strandat 5533.561 kb on - strandat 5533.561 kb on - strandat 5533.561 kb on - strandat 5533.590 kb on + strandat 5533.590 kb on + strandat 5533.590 kb on + strandat 5533.590 kb on + strandat 5533.590 kb on + strandat 5533.591 kb on - strandat 5533.591 kb on - strandat 5533.591 kb on - strandat 5533.839 kb on - strandat 5533.839 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB
remove
5,531,980 + Psyr_4667 0.57 -0.4
5,531,981 - Psyr_4667 0.58 -0.7
5,532,089 - Psyr_4667 0.64 +0.3
5,532,089 - Psyr_4667 0.64 -0.2
5,532,208 + Psyr_4667 0.71 +0.0
5,532,208 + Psyr_4667 0.71 +0.1
5,532,208 + Psyr_4667 0.71 -0.6
5,532,208 + Psyr_4667 0.71 -0.4
5,532,208 + Psyr_4667 0.71 +2.2
5,532,208 + Psyr_4667 0.71 +0.8
5,532,209 - Psyr_4667 0.71 +0.6
5,532,209 - Psyr_4667 0.71 +0.9
5,532,209 - Psyr_4667 0.71 -2.0
5,532,209 - Psyr_4667 0.71 -0.1
5,532,209 - Psyr_4667 0.71 +0.1
5,532,209 - Psyr_4667 0.71 -0.2
5,532,209 - Psyr_4667 0.71 +0.0
5,532,209 - Psyr_4667 0.71 -2.1
5,532,257 - Psyr_4667 0.74 -1.2
5,532,317 + Psyr_4667 0.78 -0.5
5,532,317 + Psyr_4667 0.78 -0.5
5,532,318 - Psyr_4667 0.78 +1.6
5,532,318 - Psyr_4667 0.78 +0.2
5,532,318 - Psyr_4667 0.78 -1.4
5,532,343 + Psyr_4667 0.79 -0.9
5,532,387 + Psyr_4667 0.82 -0.6
5,532,458 - Psyr_4667 0.86 +0.1
5,532,458 - Psyr_4667 0.86 -0.1
5,532,472 + Psyr_4667 0.87 +0.4
5,532,473 - Psyr_4667 0.87 -0.7
5,532,473 - Psyr_4667 0.87 -2.4
5,532,473 - Psyr_4667 0.87 -0.1
5,532,473 - Psyr_4667 0.87 +0.6
5,532,473 - Psyr_4667 0.87 -0.2
5,532,496 - Psyr_4667 0.88 +0.0
5,532,724 + -0.3
5,532,725 - -0.3
5,532,848 - Psyr_4668 0.17 -1.1
5,532,953 - Psyr_4668 0.31 +0.4
5,532,988 + Psyr_4668 0.35 +1.0
5,532,988 + Psyr_4668 0.35 +1.1
5,532,988 + Psyr_4668 0.35 +1.2
5,532,988 + Psyr_4668 0.35 +0.0
5,532,988 + Psyr_4668 0.35 -0.1
5,532,988 + Psyr_4668 0.35 -0.8
5,532,989 - Psyr_4668 0.35 +0.5
5,532,989 - Psyr_4668 0.35 +2.6
5,532,989 - Psyr_4668 0.35 -0.6
5,532,989 - Psyr_4668 0.35 -0.2
5,532,989 - Psyr_4668 0.35 +1.0
5,532,989 - Psyr_4668 0.35 -2.0
5,533,036 + Psyr_4668 0.41 +1.4
5,533,037 - Psyr_4668 0.41 +0.4
5,533,170 + Psyr_4668 0.58 +1.6
5,533,235 - Psyr_4668 0.66 +0.5
5,533,288 + Psyr_4668 0.73 -0.3
5,533,288 + Psyr_4668 0.73 +0.3
5,533,288 + Psyr_4668 0.73 +1.0
5,533,289 - Psyr_4668 0.73 -1.6
5,533,289 - Psyr_4668 0.73 -0.2
5,533,298 - Psyr_4668 0.74 -0.7
5,533,306 + Psyr_4668 0.75 -0.6
5,533,306 + Psyr_4668 0.75 -0.2
5,533,306 + Psyr_4668 0.75 +0.8
5,533,306 + Psyr_4668 0.75 -0.1
5,533,307 - Psyr_4668 0.75 +1.1
5,533,307 - Psyr_4668 0.75 +0.4
5,533,307 - Psyr_4668 0.75 +0.3
5,533,307 - Psyr_4668 0.75 +2.1
5,533,333 + Psyr_4668 0.78 -1.0
5,533,459 + +0.0
5,533,459 + -0.3
5,533,460 - -0.6
5,533,460 - -1.7
5,533,486 + +0.8
5,533,486 + +0.6
5,533,487 - -0.2
5,533,488 + -0.2
5,533,488 + +0.1
5,533,488 + -2.1
5,533,488 + +0.6
5,533,488 + +0.1
5,533,488 + +0.0
5,533,488 + +0.7
5,533,489 - -0.4
5,533,489 - -0.3
5,533,489 - +0.3
5,533,522 + -0.4
5,533,523 - +1.0
5,533,548 + -2.3
5,533,549 - +0.5
5,533,554 + +0.2
5,533,554 + +0.6
5,533,554 + +0.5
5,533,554 + +0.3
5,533,554 + +0.8
5,533,554 + +0.3
5,533,554 + -0.6
5,533,554 + -0.4
5,533,554 + +0.2
5,533,555 - +0.6
5,533,555 - +0.1
5,533,555 - +0.6
5,533,555 - +0.3
5,533,556 + +0.0
5,533,557 - +0.6
5,533,557 - -1.2
5,533,557 - -1.2
5,533,557 - -0.2
5,533,560 + +0.3
5,533,560 + +1.0
5,533,560 + -1.6
5,533,560 + +0.5
5,533,561 - -0.6
5,533,561 - +1.1
5,533,561 - -0.8
5,533,590 + -1.4
5,533,590 + -2.0
5,533,590 + -0.6
5,533,590 + +0.4
5,533,590 + -0.6
5,533,591 - +0.1
5,533,591 - -0.6
5,533,591 - +0.2
5,533,839 - +1.0
5,533,839 - +2.0

Or see this region's nucleotide sequence