Strain Fitness in Pseudomonas sp. RS175 around PFR28_00145

Experiment: D-Galactose carbon 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00144 and PFR28_00145 are separated by 13 nucleotidesPFR28_00145 and PFR28_00146 are separated by 212 nucleotides PFR28_00144: PFR28_00144 - putative glucarate transporter, at 167,760 to 169,124 _00144 PFR28_00145: PFR28_00145 - Galactarate dehydratase (L-threo-forming), at 169,138 to 170,691 _00145 PFR28_00146: PFR28_00146 - hypothetical protein, at 170,904 to 171,845 _00146 Position (kb) 169 170 171Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 168.214 kb on - strand, within PFR28_00144at 168.214 kb on - strand, within PFR28_00144at 168.226 kb on + strand, within PFR28_00144at 168.227 kb on - strand, within PFR28_00144at 168.227 kb on - strand, within PFR28_00144at 168.339 kb on + strand, within PFR28_00144at 168.339 kb on + strand, within PFR28_00144at 168.339 kb on + strand, within PFR28_00144at 168.339 kb on + strand, within PFR28_00144at 168.340 kb on - strand, within PFR28_00144at 168.340 kb on - strand, within PFR28_00144at 168.340 kb on - strand, within PFR28_00144at 168.340 kb on - strand, within PFR28_00144at 168.340 kb on - strand, within PFR28_00144at 168.465 kb on + strand, within PFR28_00144at 168.465 kb on + strand, within PFR28_00144at 168.465 kb on + strand, within PFR28_00144at 168.465 kb on + strand, within PFR28_00144at 168.465 kb on + strand, within PFR28_00144at 168.466 kb on - strand, within PFR28_00144at 168.466 kb on - strand, within PFR28_00144at 168.466 kb on - strand, within PFR28_00144at 168.466 kb on - strand, within PFR28_00144at 168.540 kb on + strand, within PFR28_00144at 168.540 kb on + strand, within PFR28_00144at 168.541 kb on - strand, within PFR28_00144at 168.541 kb on - strand, within PFR28_00144at 168.541 kb on - strand, within PFR28_00144at 168.567 kb on + strand, within PFR28_00144at 168.568 kb on - strand, within PFR28_00144at 168.749 kb on + strand, within PFR28_00144at 168.768 kb on + strand, within PFR28_00144at 168.768 kb on + strand, within PFR28_00144at 168.768 kb on + strand, within PFR28_00144at 168.768 kb on + strand, within PFR28_00144at 168.768 kb on + strand, within PFR28_00144at 168.768 kb on + strand, within PFR28_00144at 168.768 kb on + strand, within PFR28_00144at 168.768 kb on + strand, within PFR28_00144at 168.769 kb on - strand, within PFR28_00144at 168.769 kb on - strand, within PFR28_00144at 168.769 kb on - strand, within PFR28_00144at 168.769 kb on - strand, within PFR28_00144at 168.769 kb on - strand, within PFR28_00144at 168.769 kb on - strand, within PFR28_00144at 168.850 kb on + strand, within PFR28_00144at 168.850 kb on + strand, within PFR28_00144at 168.905 kb on + strand, within PFR28_00144at 168.951 kb on + strand, within PFR28_00144at 168.951 kb on + strand, within PFR28_00144at 169.029 kb on + strandat 169.030 kb on - strandat 169.171 kb on + strandat 169.171 kb on + strandat 169.172 kb on - strandat 169.352 kb on - strand, within PFR28_00145at 169.480 kb on + strand, within PFR28_00145at 169.481 kb on - strand, within PFR28_00145at 169.481 kb on - strand, within PFR28_00145at 169.483 kb on - strand, within PFR28_00145at 169.483 kb on - strand, within PFR28_00145at 169.483 kb on - strand, within PFR28_00145at 169.657 kb on + strand, within PFR28_00145at 169.657 kb on + strand, within PFR28_00145at 169.657 kb on + strand, within PFR28_00145at 169.657 kb on + strand, within PFR28_00145at 169.658 kb on - strand, within PFR28_00145at 169.658 kb on - strand, within PFR28_00145at 169.693 kb on + strand, within PFR28_00145at 169.693 kb on + strand, within PFR28_00145at 169.693 kb on + strand, within PFR28_00145at 169.693 kb on + strand, within PFR28_00145at 169.693 kb on + strand, within PFR28_00145at 169.693 kb on + strand, within PFR28_00145at 169.694 kb on - strand, within PFR28_00145at 169.694 kb on - strand, within PFR28_00145at 169.694 kb on - strand, within PFR28_00145at 169.694 kb on - strand, within PFR28_00145at 169.694 kb on - strand, within PFR28_00145at 169.694 kb on - strand, within PFR28_00145at 169.694 kb on - strand, within PFR28_00145at 169.843 kb on + strand, within PFR28_00145at 169.844 kb on - strand, within PFR28_00145at 169.844 kb on - strand, within PFR28_00145at 169.844 kb on - strand, within PFR28_00145at 169.844 kb on - strand, within PFR28_00145at 170.032 kb on + strand, within PFR28_00145at 170.107 kb on + strand, within PFR28_00145at 170.107 kb on + strand, within PFR28_00145at 170.108 kb on - strand, within PFR28_00145at 170.108 kb on - strand, within PFR28_00145at 170.108 kb on - strand, within PFR28_00145at 170.108 kb on - strand, within PFR28_00145at 170.108 kb on - strand, within PFR28_00145at 170.108 kb on - strand, within PFR28_00145at 170.108 kb on - strand, within PFR28_00145at 170.174 kb on - strand, within PFR28_00145at 170.174 kb on - strand, within PFR28_00145at 170.174 kb on - strand, within PFR28_00145at 170.593 kb on + strandat 170.593 kb on + strandat 170.594 kb on - strandat 170.596 kb on + strandat 170.596 kb on + strandat 170.596 kb on + strandat 170.596 kb on + strandat 170.596 kb on + strandat 170.597 kb on - strandat 170.597 kb on - strandat 170.650 kb on + strandat 170.650 kb on + strandat 170.650 kb on + strandat 170.651 kb on - strandat 170.651 kb on - strandat 170.651 kb on - strandat 170.651 kb on - strandat 170.651 kb on - strandat 170.651 kb on - strandat 170.651 kb on - strandat 170.661 kb on + strandat 170.661 kb on + strandat 170.661 kb on + strandat 170.661 kb on + strandat 170.661 kb on + strandat 170.661 kb on + strandat 170.662 kb on - strandat 170.662 kb on - strandat 170.662 kb on - strandat 170.662 kb on - strandat 170.662 kb on - strandat 170.662 kb on - strandat 170.662 kb on - strandat 170.685 kb on + strandat 170.685 kb on + strandat 170.778 kb on + strandat 170.778 kb on + strandat 170.778 kb on + strandat 170.789 kb on + strandat 170.790 kb on - strandat 170.790 kb on - strandat 170.790 kb on - strandat 170.862 kb on - strandat 170.875 kb on + strandat 171.117 kb on + strand, within PFR28_00146at 171.117 kb on + strand, within PFR28_00146at 171.117 kb on + strand, within PFR28_00146at 171.201 kb on + strand, within PFR28_00146at 171.201 kb on + strand, within PFR28_00146at 171.201 kb on + strand, within PFR28_00146at 171.202 kb on - strand, within PFR28_00146at 171.202 kb on - strand, within PFR28_00146at 171.202 kb on - strand, within PFR28_00146at 171.202 kb on - strand, within PFR28_00146at 171.264 kb on + strand, within PFR28_00146at 171.264 kb on + strand, within PFR28_00146at 171.264 kb on + strand, within PFR28_00146at 171.264 kb on + strand, within PFR28_00146at 171.264 kb on + strand, within PFR28_00146at 171.264 kb on + strand, within PFR28_00146at 171.265 kb on - strand, within PFR28_00146at 171.265 kb on - strand, within PFR28_00146at 171.265 kb on - strand, within PFR28_00146at 171.265 kb on - strand, within PFR28_00146at 171.321 kb on + strand, within PFR28_00146at 171.321 kb on + strand, within PFR28_00146at 171.321 kb on + strand, within PFR28_00146at 171.322 kb on - strand, within PFR28_00146at 171.322 kb on - strand, within PFR28_00146at 171.322 kb on - strand, within PFR28_00146at 171.322 kb on - strand, within PFR28_00146at 171.322 kb on - strand, within PFR28_00146at 171.355 kb on - strand, within PFR28_00146at 171.355 kb on - strand, within PFR28_00146at 171.495 kb on + strand, within PFR28_00146at 171.495 kb on + strand, within PFR28_00146at 171.495 kb on + strand, within PFR28_00146at 171.495 kb on + strand, within PFR28_00146at 171.495 kb on + strand, within PFR28_00146at 171.495 kb on + strand, within PFR28_00146at 171.495 kb on + strand, within PFR28_00146at 171.496 kb on - strand, within PFR28_00146at 171.496 kb on - strand, within PFR28_00146at 171.496 kb on - strand, within PFR28_00146at 171.616 kb on + strand, within PFR28_00146at 171.688 kb on - strand, within PFR28_00146at 171.688 kb on - strand, within PFR28_00146at 171.688 kb on - strand, within PFR28_00146at 171.688 kb on - strand, within PFR28_00146at 171.688 kb on - strand, within PFR28_00146

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose carbon 10 mM
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168,214 - PFR28_00144 0.33 -0.6
168,214 - PFR28_00144 0.33 -1.6
168,226 + PFR28_00144 0.34 +0.0
168,227 - PFR28_00144 0.34 +0.1
168,227 - PFR28_00144 0.34 +0.8
168,339 + PFR28_00144 0.42 +0.5
168,339 + PFR28_00144 0.42 -0.5
168,339 + PFR28_00144 0.42 +0.2
168,339 + PFR28_00144 0.42 +0.8
168,340 - PFR28_00144 0.42 +0.0
168,340 - PFR28_00144 0.42 +0.1
168,340 - PFR28_00144 0.42 +1.0
168,340 - PFR28_00144 0.42 +0.4
168,340 - PFR28_00144 0.42 +1.2
168,465 + PFR28_00144 0.52 -1.5
168,465 + PFR28_00144 0.52 -0.1
168,465 + PFR28_00144 0.52 +0.5
168,465 + PFR28_00144 0.52 +0.5
168,465 + PFR28_00144 0.52 -0.3
168,466 - PFR28_00144 0.52 +0.2
168,466 - PFR28_00144 0.52 -3.2
168,466 - PFR28_00144 0.52 -1.2
168,466 - PFR28_00144 0.52 +0.2
168,540 + PFR28_00144 0.57 +1.0
168,540 + PFR28_00144 0.57 -0.7
168,541 - PFR28_00144 0.57 +0.2
168,541 - PFR28_00144 0.57 +0.2
168,541 - PFR28_00144 0.57 +0.0
168,567 + PFR28_00144 0.59 +0.4
168,568 - PFR28_00144 0.59 +0.8
168,749 + PFR28_00144 0.72 +0.2
168,768 + PFR28_00144 0.74 +0.1
168,768 + PFR28_00144 0.74 -1.2
168,768 + PFR28_00144 0.74 -0.0
168,768 + PFR28_00144 0.74 -0.2
168,768 + PFR28_00144 0.74 -0.1
168,768 + PFR28_00144 0.74 -0.9
168,768 + PFR28_00144 0.74 +1.0
168,768 + PFR28_00144 0.74 +0.2
168,769 - PFR28_00144 0.74 +0.2
168,769 - PFR28_00144 0.74 +0.7
168,769 - PFR28_00144 0.74 +0.8
168,769 - PFR28_00144 0.74 -0.2
168,769 - PFR28_00144 0.74 -0.5
168,769 - PFR28_00144 0.74 +0.7
168,850 + PFR28_00144 0.80 -0.7
168,850 + PFR28_00144 0.80 +0.4
168,905 + PFR28_00144 0.84 +1.2
168,951 + PFR28_00144 0.87 -0.2
168,951 + PFR28_00144 0.87 -0.9
169,029 + +0.5
169,030 - -0.7
169,171 + -0.1
169,171 + -0.8
169,172 - -0.1
169,352 - PFR28_00145 0.14 +0.0
169,480 + PFR28_00145 0.22 +0.8
169,481 - PFR28_00145 0.22 -0.1
169,481 - PFR28_00145 0.22 +0.5
169,483 - PFR28_00145 0.22 +0.5
169,483 - PFR28_00145 0.22 -0.9
169,483 - PFR28_00145 0.22 +0.0
169,657 + PFR28_00145 0.33 +1.1
169,657 + PFR28_00145 0.33 +0.1
169,657 + PFR28_00145 0.33 +0.9
169,657 + PFR28_00145 0.33 -0.3
169,658 - PFR28_00145 0.33 -0.5
169,658 - PFR28_00145 0.33 +0.7
169,693 + PFR28_00145 0.36 +0.9
169,693 + PFR28_00145 0.36 -0.7
169,693 + PFR28_00145 0.36 -0.6
169,693 + PFR28_00145 0.36 -0.2
169,693 + PFR28_00145 0.36 +0.1
169,693 + PFR28_00145 0.36 +0.2
169,694 - PFR28_00145 0.36 -0.0
169,694 - PFR28_00145 0.36 -1.1
169,694 - PFR28_00145 0.36 -0.2
169,694 - PFR28_00145 0.36 +0.7
169,694 - PFR28_00145 0.36 -0.2
169,694 - PFR28_00145 0.36 -0.2
169,694 - PFR28_00145 0.36 -0.1
169,843 + PFR28_00145 0.45 -0.4
169,844 - PFR28_00145 0.45 +1.2
169,844 - PFR28_00145 0.45 +0.7
169,844 - PFR28_00145 0.45 +1.0
169,844 - PFR28_00145 0.45 -1.2
170,032 + PFR28_00145 0.58 -0.5
170,107 + PFR28_00145 0.62 -0.4
170,107 + PFR28_00145 0.62 -1.4
170,108 - PFR28_00145 0.62 +1.4
170,108 - PFR28_00145 0.62 +1.1
170,108 - PFR28_00145 0.62 +0.2
170,108 - PFR28_00145 0.62 +0.5
170,108 - PFR28_00145 0.62 +1.1
170,108 - PFR28_00145 0.62 +0.6
170,108 - PFR28_00145 0.62 -0.2
170,174 - PFR28_00145 0.67 +0.4
170,174 - PFR28_00145 0.67 +0.1
170,174 - PFR28_00145 0.67 +0.3
170,593 + +0.4
170,593 + -0.4
170,594 - +0.7
170,596 + -0.5
170,596 + -0.8
170,596 + -0.4
170,596 + -0.1
170,596 + -0.2
170,597 - -0.4
170,597 - +0.5
170,650 + +0.4
170,650 + +0.4
170,650 + -1.1
170,651 - +0.6
170,651 - -0.2
170,651 - +0.6
170,651 - +0.0
170,651 - +0.4
170,651 - -0.8
170,651 - -0.1
170,661 + +0.8
170,661 + +0.5
170,661 + -0.4
170,661 + +0.0
170,661 + +0.3
170,661 + -1.8
170,662 - -0.3
170,662 - +0.4
170,662 - +0.8
170,662 - -1.5
170,662 - -0.3
170,662 - +0.1
170,662 - +0.2
170,685 + +0.6
170,685 + +1.0
170,778 + -0.2
170,778 + +0.1
170,778 + +0.9
170,789 + +1.3
170,790 - -0.2
170,790 - +0.0
170,790 - -0.6
170,862 - +0.3
170,875 + +1.2
171,117 + PFR28_00146 0.23 -1.0
171,117 + PFR28_00146 0.23 +0.3
171,117 + PFR28_00146 0.23 +0.5
171,201 + PFR28_00146 0.32 +0.3
171,201 + PFR28_00146 0.32 -0.5
171,201 + PFR28_00146 0.32 -0.3
171,202 - PFR28_00146 0.32 -0.3
171,202 - PFR28_00146 0.32 +3.0
171,202 - PFR28_00146 0.32 +0.5
171,202 - PFR28_00146 0.32 -2.3
171,264 + PFR28_00146 0.38 +0.2
171,264 + PFR28_00146 0.38 +0.5
171,264 + PFR28_00146 0.38 +1.4
171,264 + PFR28_00146 0.38 -0.4
171,264 + PFR28_00146 0.38 -0.0
171,264 + PFR28_00146 0.38 +0.4
171,265 - PFR28_00146 0.38 +1.7
171,265 - PFR28_00146 0.38 -0.1
171,265 - PFR28_00146 0.38 -1.8
171,265 - PFR28_00146 0.38 +0.0
171,321 + PFR28_00146 0.44 +0.4
171,321 + PFR28_00146 0.44 -0.6
171,321 + PFR28_00146 0.44 +3.0
171,322 - PFR28_00146 0.44 -0.1
171,322 - PFR28_00146 0.44 -0.3
171,322 - PFR28_00146 0.44 -0.4
171,322 - PFR28_00146 0.44 -0.3
171,322 - PFR28_00146 0.44 -0.7
171,355 - PFR28_00146 0.48 +3.0
171,355 - PFR28_00146 0.48 +0.5
171,495 + PFR28_00146 0.63 -0.5
171,495 + PFR28_00146 0.63 -0.4
171,495 + PFR28_00146 0.63 +0.0
171,495 + PFR28_00146 0.63 +0.7
171,495 + PFR28_00146 0.63 +0.1
171,495 + PFR28_00146 0.63 -0.2
171,495 + PFR28_00146 0.63 +1.0
171,496 - PFR28_00146 0.63 -0.5
171,496 - PFR28_00146 0.63 -0.5
171,496 - PFR28_00146 0.63 +0.6
171,616 + PFR28_00146 0.76 +0.1
171,688 - PFR28_00146 0.83 -1.5
171,688 - PFR28_00146 0.83 -0.6
171,688 - PFR28_00146 0.83 -0.5
171,688 - PFR28_00146 0.83 +0.4
171,688 - PFR28_00146 0.83 +0.4

Or see this region's nucleotide sequence