Experiment: Pectic galactan from potato 5mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16215 and HMPREF1058_RS16210 are separated by 185 nucleotides HMPREF1058_RS16210 and HMPREF1058_RS16205 are separated by 3 nucleotides HMPREF1058_RS16205 and HMPREF1058_RS16200 are separated by 17 nucleotides HMPREF1058_RS16200 and HMPREF1058_RS16195 are separated by 282 nucleotides
HMPREF1058_RS16215: HMPREF1058_RS16215 - hypothetical protein, at 731,042 to 731,509
_RS16215
HMPREF1058_RS16210: HMPREF1058_RS16210 - hypothetical protein, at 731,695 to 732,264
_RS16210
HMPREF1058_RS16205: HMPREF1058_RS16205 - DUF3987 domain-containing protein, at 732,268 to 734,211
_RS16205
HMPREF1058_RS16200: HMPREF1058_RS16200 - DUF4248 domain-containing protein, at 734,229 to 734,453
_RS16200
HMPREF1058_RS16195: HMPREF1058_RS16195 - hypothetical protein, at 734,736 to 735,275
_RS16195
Position (kb) 732
733
734
735 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 731.273 kb on + strand, within HMPREF1058_RS16215 at 731.285 kb on - strand, within HMPREF1058_RS16215 at 731.285 kb on - strand, within HMPREF1058_RS16215 at 731.287 kb on - strand, within HMPREF1058_RS16215 at 731.512 kb on - strand at 731.754 kb on + strand, within HMPREF1058_RS16210 at 731.755 kb on - strand at 731.755 kb on - strand, within HMPREF1058_RS16210 at 731.755 kb on - strand, within HMPREF1058_RS16210 at 731.783 kb on - strand, within HMPREF1058_RS16210 at 731.880 kb on - strand, within HMPREF1058_RS16210 at 731.912 kb on - strand, within HMPREF1058_RS16210 at 732.038 kb on + strand, within HMPREF1058_RS16210 at 732.170 kb on - strand, within HMPREF1058_RS16210 at 732.256 kb on - strand at 732.279 kb on + strand at 732.352 kb on + strand at 732.353 kb on - strand at 732.353 kb on - strand at 732.355 kb on - strand at 732.355 kb on - strand at 732.439 kb on + strand at 732.616 kb on + strand, within HMPREF1058_RS16205 at 732.774 kb on - strand, within HMPREF1058_RS16205 at 732.774 kb on - strand, within HMPREF1058_RS16205 at 733.016 kb on - strand, within HMPREF1058_RS16205 at 733.133 kb on + strand, within HMPREF1058_RS16205 at 733.133 kb on + strand, within HMPREF1058_RS16205 at 733.164 kb on - strand, within HMPREF1058_RS16205 at 733.273 kb on + strand, within HMPREF1058_RS16205 at 733.308 kb on + strand, within HMPREF1058_RS16205 at 733.408 kb on + strand, within HMPREF1058_RS16205 at 733.408 kb on + strand, within HMPREF1058_RS16205 at 733.411 kb on + strand, within HMPREF1058_RS16205 at 733.412 kb on - strand, within HMPREF1058_RS16205 at 733.413 kb on + strand, within HMPREF1058_RS16205 at 733.413 kb on + strand, within HMPREF1058_RS16205 at 733.414 kb on - strand, within HMPREF1058_RS16205 at 733.574 kb on + strand, within HMPREF1058_RS16205 at 733.665 kb on + strand, within HMPREF1058_RS16205 at 734.045 kb on + strand at 734.046 kb on - strand at 734.158 kb on - strand at 734.536 kb on + strand at 734.576 kb on + strand at 734.596 kb on + strand at 734.607 kb on - strand at 734.636 kb on - strand at 734.732 kb on + strand at 734.732 kb on + strand at 734.733 kb on - strand at 734.745 kb on + strand at 734.745 kb on + strand at 734.824 kb on + strand, within HMPREF1058_RS16195 at 734.824 kb on + strand, within HMPREF1058_RS16195 at 734.872 kb on + strand, within HMPREF1058_RS16195 at 734.874 kb on + strand, within HMPREF1058_RS16195 at 735.053 kb on - strand, within HMPREF1058_RS16195 at 735.053 kb on - strand, within HMPREF1058_RS16195
Per-strain Table
Position Strand Gene LocusTag Fraction Pectic galactan from potato 5mg/ml (C) remove 731,273 + HMPREF1058_RS16215 0.49 -0.9 731,285 - HMPREF1058_RS16215 0.52 +2.5 731,285 - HMPREF1058_RS16215 0.52 +3.8 731,287 - HMPREF1058_RS16215 0.52 +3.6 731,512 - -1.2 731,754 + HMPREF1058_RS16210 0.10 -0.9 731,755 - +1.0 731,755 - HMPREF1058_RS16210 0.11 +2.7 731,755 - HMPREF1058_RS16210 0.11 +3.4 731,783 - HMPREF1058_RS16210 0.15 +4.7 731,880 - HMPREF1058_RS16210 0.32 +5.4 731,912 - HMPREF1058_RS16210 0.38 +0.7 732,038 + HMPREF1058_RS16210 0.60 -2.2 732,170 - HMPREF1058_RS16210 0.83 +3.2 732,256 - +4.9 732,279 + -0.2 732,352 + -2.1 732,353 - +3.2 732,353 - +2.3 732,355 - +3.8 732,355 - +4.7 732,439 + -0.5 732,616 + HMPREF1058_RS16205 0.18 -0.3 732,774 - HMPREF1058_RS16205 0.26 +4.6 732,774 - HMPREF1058_RS16205 0.26 +5.1 733,016 - HMPREF1058_RS16205 0.38 +4.6 733,133 + HMPREF1058_RS16205 0.44 +0.7 733,133 + HMPREF1058_RS16205 0.44 -1.0 733,164 - HMPREF1058_RS16205 0.46 +1.4 733,273 + HMPREF1058_RS16205 0.52 -0.7 733,308 + HMPREF1058_RS16205 0.53 +0.0 733,408 + HMPREF1058_RS16205 0.59 -1.0 733,408 + HMPREF1058_RS16205 0.59 -0.3 733,411 + HMPREF1058_RS16205 0.59 -1.8 733,412 - HMPREF1058_RS16205 0.59 +2.3 733,413 + HMPREF1058_RS16205 0.59 +0.4 733,413 + HMPREF1058_RS16205 0.59 -0.0 733,414 - HMPREF1058_RS16205 0.59 +3.8 733,574 + HMPREF1058_RS16205 0.67 +0.0 733,665 + HMPREF1058_RS16205 0.72 -0.4 734,045 + -1.8 734,046 - +3.2 734,158 - +4.6 734,536 + -1.5 734,576 + -0.6 734,596 + -1.2 734,607 - +2.5 734,636 - +1.6 734,732 + -0.5 734,732 + -0.6 734,733 - +1.9 734,745 + -1.2 734,745 + -0.0 734,824 + HMPREF1058_RS16195 0.16 +0.3 734,824 + HMPREF1058_RS16195 0.16 -1.4 734,872 + HMPREF1058_RS16195 0.25 +1.6 734,874 + HMPREF1058_RS16195 0.26 -1.8 735,053 - HMPREF1058_RS16195 0.59 +1.5 735,053 - HMPREF1058_RS16195 0.59 +5.0
Or see this region's nucleotide sequence