Experiment: D-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS22820 and ABID97_RS22825 are separated by 59 nucleotides ABID97_RS22825 and ABID97_RS22830 are separated by 63 nucleotides
ABID97_RS22820: ABID97_RS22820 - branched-chain amino acid ABC transporter ATP-binding protein/permease, at 4,724,184 to 4,726,088
_RS22820
ABID97_RS22825: ABID97_RS22825 - ABC transporter ATP-binding protein, at 4,726,148 to 4,726,879
_RS22825
ABID97_RS22830: ABID97_RS22830 - phenylacetic acid degradation bifunctional protein PaaZ, at 4,726,943 to 4,728,997
_RS22830
Position (kb)
4726
4727 Strain fitness (log2 ratio)
-1
0
1 at 4726.231 kb on - strand, within ABID97_RS22825 at 4726.231 kb on - strand, within ABID97_RS22825 at 4726.463 kb on + strand, within ABID97_RS22825 at 4726.849 kb on + strand at 4726.850 kb on - strand at 4726.850 kb on - strand at 4726.853 kb on + strand at 4726.853 kb on + strand at 4726.853 kb on + strand at 4726.853 kb on + strand at 4726.853 kb on + strand at 4726.853 kb on + strand at 4726.854 kb on - strand at 4726.854 kb on - strand at 4726.964 kb on + strand at 4727.189 kb on + strand, within ABID97_RS22830 at 4727.504 kb on + strand, within ABID97_RS22830 at 4727.505 kb on - strand, within ABID97_RS22830 at 4727.505 kb on - strand, within ABID97_RS22830 at 4727.505 kb on - strand, within ABID97_RS22830
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose (C) remove 4,726,231 - ABID97_RS22825 0.11 +0.5 4,726,231 - ABID97_RS22825 0.11 +0.6 4,726,463 + ABID97_RS22825 0.43 +0.9 4,726,849 + -0.2 4,726,850 - +0.6 4,726,850 - -0.7 4,726,853 + -0.6 4,726,853 + -1.3 4,726,853 + -0.2 4,726,853 + -0.5 4,726,853 + +0.5 4,726,853 + -0.8 4,726,854 - -0.2 4,726,854 - +0.5 4,726,964 + -0.0 4,727,189 + ABID97_RS22830 0.12 -0.1 4,727,504 + ABID97_RS22830 0.27 +0.5 4,727,505 - ABID97_RS22830 0.27 -0.3 4,727,505 - ABID97_RS22830 0.27 +1.2 4,727,505 - ABID97_RS22830 0.27 -0.0
Or see this region's nucleotide sequence