Experiment: D-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01065 and ABID97_RS01070 overlap by 4 nucleotides ABID97_RS01070 and ABID97_RS01075 are separated by 84 nucleotides ABID97_RS01075 and ABID97_RS01080 overlap by 4 nucleotides ABID97_RS01080 and ABID97_RS01085 are separated by 164 nucleotides
ABID97_RS01065: ABID97_RS01065 - hypothetical protein, at 214,762 to 215,232
_RS01065
ABID97_RS01070: ABID97_RS01070 - Crp/Fnr family transcriptional regulator, at 215,229 to 215,999
_RS01070
ABID97_RS01075: ABID97_RS01075 - AMP-binding protein, at 216,084 to 218,039
_RS01075
ABID97_RS01080: ABID97_RS01080 - ABC transporter ATP-binding protein, at 218,036 to 218,821
_RS01080
ABID97_RS01085: ABID97_RS01085 - branched-chain amino acid ABC transporter permease, at 218,986 to 219,915
_RS01085
Position (kb) 216
217
218
219 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 215.180 kb on + strand, within ABID97_RS01065 at 215.181 kb on - strand, within ABID97_RS01065 at 215.181 kb on - strand, within ABID97_RS01065 at 215.398 kb on + strand, within ABID97_RS01070 at 215.663 kb on - strand, within ABID97_RS01070 at 216.017 kb on + strand at 216.018 kb on - strand at 216.018 kb on - strand at 216.027 kb on - strand at 216.027 kb on - strand at 216.069 kb on + strand at 216.304 kb on - strand, within ABID97_RS01075 at 216.304 kb on - strand, within ABID97_RS01075 at 216.555 kb on + strand, within ABID97_RS01075 at 216.660 kb on + strand, within ABID97_RS01075 at 216.660 kb on + strand, within ABID97_RS01075 at 216.909 kb on + strand, within ABID97_RS01075 at 216.912 kb on + strand, within ABID97_RS01075 at 217.083 kb on + strand, within ABID97_RS01075 at 217.083 kb on + strand, within ABID97_RS01075 at 217.083 kb on + strand, within ABID97_RS01075 at 217.084 kb on - strand, within ABID97_RS01075 at 217.198 kb on - strand, within ABID97_RS01075 at 217.255 kb on - strand, within ABID97_RS01075 at 217.383 kb on + strand, within ABID97_RS01075 at 217.384 kb on - strand, within ABID97_RS01075 at 217.384 kb on - strand, within ABID97_RS01075 at 217.539 kb on + strand, within ABID97_RS01075 at 217.911 kb on + strand at 217.932 kb on + strand at 217.932 kb on + strand at 218.214 kb on - strand, within ABID97_RS01080 at 218.735 kb on + strand, within ABID97_RS01080 at 218.801 kb on + strand at 219.037 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose (C) remove 215,180 + ABID97_RS01065 0.89 -0.2 215,181 - ABID97_RS01065 0.89 -0.2 215,181 - ABID97_RS01065 0.89 +0.3 215,398 + ABID97_RS01070 0.22 -0.3 215,663 - ABID97_RS01070 0.56 -1.0 216,017 + +0.0 216,018 - -1.1 216,018 - +1.2 216,027 - -0.3 216,027 - +1.7 216,069 + +0.3 216,304 - ABID97_RS01075 0.11 +1.0 216,304 - ABID97_RS01075 0.11 +0.3 216,555 + ABID97_RS01075 0.24 +0.2 216,660 + ABID97_RS01075 0.29 -0.0 216,660 + ABID97_RS01075 0.29 +1.3 216,909 + ABID97_RS01075 0.42 +2.0 216,912 + ABID97_RS01075 0.42 -1.3 217,083 + ABID97_RS01075 0.51 +0.5 217,083 + ABID97_RS01075 0.51 +0.5 217,083 + ABID97_RS01075 0.51 +4.8 217,084 - ABID97_RS01075 0.51 +1.5 217,198 - ABID97_RS01075 0.57 -0.7 217,255 - ABID97_RS01075 0.60 -0.5 217,383 + ABID97_RS01075 0.66 +0.0 217,384 - ABID97_RS01075 0.66 -0.0 217,384 - ABID97_RS01075 0.66 +0.3 217,539 + ABID97_RS01075 0.74 +0.7 217,911 + -0.5 217,932 + +0.2 217,932 + -0.6 218,214 - ABID97_RS01080 0.23 -0.1 218,735 + ABID97_RS01080 0.89 -0.1 218,801 + -0.6 219,037 + +0.4
Or see this region's nucleotide sequence