Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1916 and EX28DRAFT_1917 are separated by 7 nucleotides EX28DRAFT_1917 and EX28DRAFT_1918 are separated by 9 nucleotides EX28DRAFT_1918 and EX28DRAFT_1919 are separated by 9 nucleotides EX28DRAFT_1919 and EX28DRAFT_1920 are separated by 21 nucleotides
EX28DRAFT_1916: EX28DRAFT_1916 - pyrimidine utilization protein C, at 1,927,257 to 1,927,643
_1916
EX28DRAFT_1917: EX28DRAFT_1917 - pyrimidine utilization protein D, at 1,927,651 to 1,928,451
_1917
EX28DRAFT_1918: EX28DRAFT_1918 - Nitroreductase, at 1,928,461 to 1,929,051
_1918
EX28DRAFT_1919: EX28DRAFT_1919 - pyrimidine utilization flavin reductase protein F, at 1,929,061 to 1,929,555
_1919
EX28DRAFT_1920: EX28DRAFT_1920 - pyrimidine utilization transport protein G, at 1,929,577 to 1,930,899
_1920
Position (kb) 1928
1929
1930 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1927.512 kb on + strand, within EX28DRAFT_1916 at 1927.533 kb on + strand, within EX28DRAFT_1916 at 1927.533 kb on + strand, within EX28DRAFT_1916 at 1927.650 kb on + strand at 1927.651 kb on - strand at 1927.704 kb on + strand at 1927.732 kb on + strand, within EX28DRAFT_1917 at 1927.733 kb on - strand, within EX28DRAFT_1917 at 1927.784 kb on - strand, within EX28DRAFT_1917 at 1928.050 kb on + strand, within EX28DRAFT_1917 at 1928.260 kb on - strand, within EX28DRAFT_1917 at 1928.260 kb on - strand, within EX28DRAFT_1917 at 1928.448 kb on - strand at 1928.449 kb on + strand at 1928.459 kb on + strand at 1928.570 kb on - strand, within EX28DRAFT_1918 at 1928.791 kb on - strand, within EX28DRAFT_1918 at 1928.852 kb on - strand, within EX28DRAFT_1918 at 1929.075 kb on + strand at 1929.212 kb on + strand, within EX28DRAFT_1919 at 1929.212 kb on + strand, within EX28DRAFT_1919 at 1929.302 kb on + strand, within EX28DRAFT_1919 at 1929.303 kb on - strand, within EX28DRAFT_1919 at 1929.553 kb on + strand at 1929.753 kb on + strand, within EX28DRAFT_1920 at 1929.818 kb on - strand, within EX28DRAFT_1920 at 1929.818 kb on - strand, within EX28DRAFT_1920 at 1929.938 kb on - strand, within EX28DRAFT_1920 at 1929.938 kb on - strand, within EX28DRAFT_1920
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 1,927,512 + EX28DRAFT_1916 0.66 +0.2 1,927,533 + EX28DRAFT_1916 0.71 +0.9 1,927,533 + EX28DRAFT_1916 0.71 +0.8 1,927,650 + -0.2 1,927,651 - -0.3 1,927,704 + -1.6 1,927,732 + EX28DRAFT_1917 0.10 +0.0 1,927,733 - EX28DRAFT_1917 0.10 +3.0 1,927,784 - EX28DRAFT_1917 0.17 -1.0 1,928,050 + EX28DRAFT_1917 0.50 +1.2 1,928,260 - EX28DRAFT_1917 0.76 +3.1 1,928,260 - EX28DRAFT_1917 0.76 +0.7 1,928,448 - +0.9 1,928,449 + +1.1 1,928,459 + -0.2 1,928,570 - EX28DRAFT_1918 0.18 -0.4 1,928,791 - EX28DRAFT_1918 0.56 -0.4 1,928,852 - EX28DRAFT_1918 0.66 -0.3 1,929,075 + -1.9 1,929,212 + EX28DRAFT_1919 0.31 +0.6 1,929,212 + EX28DRAFT_1919 0.31 -0.2 1,929,302 + EX28DRAFT_1919 0.49 +0.4 1,929,303 - EX28DRAFT_1919 0.49 -0.0 1,929,553 + +0.8 1,929,753 + EX28DRAFT_1920 0.13 -3.0 1,929,818 - EX28DRAFT_1920 0.18 -2.8 1,929,818 - EX28DRAFT_1920 0.18 +1.3 1,929,938 - EX28DRAFT_1920 0.27 +0.2 1,929,938 - EX28DRAFT_1920 0.27 -0.5
Or see this region's nucleotide sequence