Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0769 and EX28DRAFT_0770 are separated by 107 nucleotides EX28DRAFT_0770 and EX28DRAFT_0771 are separated by 37 nucleotides EX28DRAFT_0771 and EX28DRAFT_0772 are separated by 208 nucleotides EX28DRAFT_0772 and EX28DRAFT_0773 are separated by 112 nucleotides
EX28DRAFT_0769: EX28DRAFT_0769 - Uncharacterized proteins, homologs of microcin C7 resistance protein MccF, at 766,896 to 767,810
_0769
EX28DRAFT_0770: EX28DRAFT_0770 - Transglycosylase SLT domain, at 767,918 to 768,529
_0770
EX28DRAFT_0771: EX28DRAFT_0771 - Predicted glycosyltransferase, at 768,567 to 769,298
_0771
EX28DRAFT_0772: EX28DRAFT_0772 - Predicted membrane protein, at 769,507 to 769,761
_0772
EX28DRAFT_0773: EX28DRAFT_0773 - TonB-dependent siderophore receptor, at 769,874 to 771,976
_0773
Position (kb) 768
769
770 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 767.836 kb on + strand at 767.837 kb on - strand at 767.844 kb on + strand at 767.844 kb on + strand at 767.844 kb on + strand at 767.844 kb on + strand at 767.845 kb on - strand at 767.858 kb on + strand at 767.860 kb on + strand at 767.861 kb on - strand at 767.861 kb on - strand at 767.861 kb on - strand at 767.904 kb on + strand at 767.910 kb on + strand at 767.910 kb on + strand at 767.911 kb on - strand at 767.911 kb on - strand at 768.200 kb on + strand, within EX28DRAFT_0770 at 768.200 kb on + strand, within EX28DRAFT_0770 at 768.286 kb on + strand, within EX28DRAFT_0770 at 768.336 kb on - strand, within EX28DRAFT_0770 at 768.491 kb on + strand at 768.493 kb on + strand at 768.494 kb on - strand at 768.528 kb on - strand at 768.528 kb on - strand at 768.528 kb on - strand at 768.528 kb on - strand at 768.614 kb on - strand at 768.618 kb on - strand at 768.751 kb on + strand, within EX28DRAFT_0771 at 768.952 kb on + strand, within EX28DRAFT_0771 at 768.953 kb on - strand, within EX28DRAFT_0771 at 769.053 kb on + strand, within EX28DRAFT_0771 at 769.120 kb on + strand, within EX28DRAFT_0771 at 769.248 kb on + strand at 769.248 kb on + strand at 769.248 kb on + strand at 769.249 kb on - strand at 769.251 kb on + strand at 769.251 kb on + strand at 769.316 kb on + strand at 769.316 kb on + strand at 769.316 kb on + strand at 769.317 kb on - strand at 769.394 kb on + strand at 769.448 kb on + strand at 769.448 kb on + strand at 769.448 kb on + strand at 769.449 kb on - strand at 769.513 kb on - strand at 769.527 kb on + strand at 769.539 kb on + strand, within EX28DRAFT_0772 at 769.674 kb on - strand, within EX28DRAFT_0772 at 769.674 kb on - strand, within EX28DRAFT_0772 at 769.674 kb on - strand, within EX28DRAFT_0772 at 769.737 kb on - strand at 769.759 kb on + strand at 769.760 kb on - strand at 769.807 kb on + strand at 770.158 kb on + strand, within EX28DRAFT_0773 at 770.159 kb on - strand, within EX28DRAFT_0773 at 770.159 kb on - strand, within EX28DRAFT_0773 at 770.179 kb on + strand, within EX28DRAFT_0773 at 770.234 kb on + strand, within EX28DRAFT_0773 at 770.234 kb on + strand, within EX28DRAFT_0773 at 770.235 kb on - strand, within EX28DRAFT_0773 at 770.236 kb on + strand, within EX28DRAFT_0773 at 770.293 kb on + strand, within EX28DRAFT_0773
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 767,836 + -2.1 767,837 - +0.8 767,844 + -0.3 767,844 + +0.5 767,844 + -0.1 767,844 + +0.2 767,845 - +0.4 767,858 + +0.3 767,860 + +1.1 767,861 - +0.3 767,861 - +0.5 767,861 - +0.0 767,904 + -0.7 767,910 + -0.8 767,910 + +1.0 767,911 - +0.1 767,911 - -0.6 768,200 + EX28DRAFT_0770 0.46 +2.6 768,200 + EX28DRAFT_0770 0.46 -1.6 768,286 + EX28DRAFT_0770 0.60 +0.3 768,336 - EX28DRAFT_0770 0.68 +0.9 768,491 + +1.8 768,493 + +0.2 768,494 - +0.7 768,528 - +0.3 768,528 - -0.4 768,528 - -0.3 768,528 - -2.0 768,614 - +0.2 768,618 - +4.6 768,751 + EX28DRAFT_0771 0.25 -0.4 768,952 + EX28DRAFT_0771 0.53 -0.2 768,953 - EX28DRAFT_0771 0.53 -2.6 769,053 + EX28DRAFT_0771 0.66 -0.5 769,120 + EX28DRAFT_0771 0.76 +0.3 769,248 + +0.2 769,248 + +0.2 769,248 + +1.2 769,249 - +0.4 769,251 + -2.8 769,251 + -1.9 769,316 + +4.9 769,316 + +0.5 769,316 + -1.3 769,317 - +0.4 769,394 + -2.0 769,448 + +5.1 769,448 + +1.2 769,448 + -0.3 769,449 - -0.8 769,513 - -0.5 769,527 + +2.0 769,539 + EX28DRAFT_0772 0.13 -1.2 769,674 - EX28DRAFT_0772 0.65 -1.5 769,674 - EX28DRAFT_0772 0.65 +1.2 769,674 - EX28DRAFT_0772 0.65 -0.8 769,737 - +0.1 769,759 + -0.3 769,760 - -0.1 769,807 + -0.2 770,158 + EX28DRAFT_0773 0.14 +0.1 770,159 - EX28DRAFT_0773 0.14 -1.2 770,159 - EX28DRAFT_0773 0.14 +0.4 770,179 + EX28DRAFT_0773 0.15 -0.5 770,234 + EX28DRAFT_0773 0.17 -2.4 770,234 + EX28DRAFT_0773 0.17 +0.6 770,235 - EX28DRAFT_0773 0.17 -0.7 770,236 + EX28DRAFT_0773 0.17 -4.0 770,293 + EX28DRAFT_0773 0.20 +0.5
Or see this region's nucleotide sequence