Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3672

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3670 and EX28DRAFT_3671 are separated by 43 nucleotidesEX28DRAFT_3671 and EX28DRAFT_3672 are separated by 574 nucleotidesEX28DRAFT_3672 and EX28DRAFT_3673 are separated by 380 nucleotides EX28DRAFT_3670: EX28DRAFT_3670 - 2-isopropylmalate synthase (EC 2.3.3.13), at 336,886 to 338,457 _3670 EX28DRAFT_3671: EX28DRAFT_3671 - RNA, at 338,501 to 338,649 _3671 EX28DRAFT_3672: EX28DRAFT_3672 - Transcriptional regulator, at 339,224 to 340,186 _3672 EX28DRAFT_3673: EX28DRAFT_3673 - acetolactate synthase, large subunit (EC 2.2.1.6), at 340,567 to 342,291 _3673 Position (kb) 339 340 341Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 338.346 kb on + strandat 338.427 kb on + strandat 338.427 kb on + strandat 338.427 kb on + strandat 338.428 kb on - strandat 338.463 kb on - strandat 338.500 kb on + strandat 338.501 kb on - strandat 338.537 kb on - strand, within EX28DRAFT_3671at 338.600 kb on + strand, within EX28DRAFT_3671at 338.603 kb on + strand, within EX28DRAFT_3671at 338.604 kb on - strand, within EX28DRAFT_3671at 338.604 kb on - strand, within EX28DRAFT_3671at 338.604 kb on - strand, within EX28DRAFT_3671at 338.604 kb on - strand, within EX28DRAFT_3671at 338.659 kb on + strandat 338.668 kb on - strandat 338.755 kb on - strandat 338.832 kb on - strandat 338.904 kb on + strandat 338.926 kb on + strandat 339.037 kb on + strandat 339.083 kb on + strandat 339.194 kb on + strandat 339.259 kb on + strandat 339.298 kb on - strandat 339.355 kb on + strand, within EX28DRAFT_3672at 339.475 kb on + strand, within EX28DRAFT_3672at 339.615 kb on - strand, within EX28DRAFT_3672at 339.615 kb on - strand, within EX28DRAFT_3672at 339.632 kb on + strand, within EX28DRAFT_3672at 339.677 kb on - strand, within EX28DRAFT_3672at 339.860 kb on + strand, within EX28DRAFT_3672at 339.860 kb on + strand, within EX28DRAFT_3672at 339.860 kb on + strand, within EX28DRAFT_3672at 339.862 kb on + strand, within EX28DRAFT_3672at 339.863 kb on - strand, within EX28DRAFT_3672at 339.896 kb on + strand, within EX28DRAFT_3672at 339.897 kb on - strand, within EX28DRAFT_3672at 339.897 kb on - strand, within EX28DRAFT_3672at 339.897 kb on - strand, within EX28DRAFT_3672at 339.897 kb on - strand, within EX28DRAFT_3672at 339.934 kb on + strand, within EX28DRAFT_3672at 339.953 kb on + strand, within EX28DRAFT_3672at 339.979 kb on - strand, within EX28DRAFT_3672at 339.982 kb on - strand, within EX28DRAFT_3672at 340.086 kb on + strand, within EX28DRAFT_3672at 340.242 kb on - strandat 340.339 kb on - strandat 340.369 kb on - strandat 340.405 kb on + strandat 340.416 kb on + strandat 340.483 kb on + strandat 340.484 kb on - strandat 340.486 kb on - strandat 340.541 kb on + strandat 340.541 kb on + strandat 340.542 kb on - strandat 340.622 kb on + strandat 340.666 kb on + strandat 340.667 kb on - strandat 340.667 kb on - strandat 340.667 kb on - strandat 340.709 kb on + strandat 340.731 kb on - strandat 340.778 kb on + strand, within EX28DRAFT_3673at 340.779 kb on - strand, within EX28DRAFT_3673at 340.781 kb on + strand, within EX28DRAFT_3673at 340.834 kb on + strand, within EX28DRAFT_3673at 340.835 kb on - strand, within EX28DRAFT_3673at 340.835 kb on - strand, within EX28DRAFT_3673at 341.053 kb on - strand, within EX28DRAFT_3673at 341.086 kb on + strand, within EX28DRAFT_3673at 341.087 kb on - strand, within EX28DRAFT_3673at 341.119 kb on + strand, within EX28DRAFT_3673at 341.119 kb on + strand, within EX28DRAFT_3673

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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338,346 + -1.4
338,427 + -2.1
338,427 + -1.9
338,427 + -0.5
338,428 - -3.4
338,463 - -1.9
338,500 + -2.3
338,501 - -0.9
338,537 - EX28DRAFT_3671 0.24 -0.4
338,600 + EX28DRAFT_3671 0.66 -2.3
338,603 + EX28DRAFT_3671 0.68 -4.4
338,604 - EX28DRAFT_3671 0.69 -0.7
338,604 - EX28DRAFT_3671 0.69 -0.3
338,604 - EX28DRAFT_3671 0.69 -0.0
338,604 - EX28DRAFT_3671 0.69 -3.2
338,659 + -0.8
338,668 - -0.8
338,755 - -0.0
338,832 - -0.5
338,904 + +0.0
338,926 + +1.5
339,037 + +2.5
339,083 + +0.7
339,194 + +0.3
339,259 + +2.1
339,298 - -0.7
339,355 + EX28DRAFT_3672 0.14 +1.8
339,475 + EX28DRAFT_3672 0.26 -2.9
339,615 - EX28DRAFT_3672 0.41 -1.6
339,615 - EX28DRAFT_3672 0.41 +0.7
339,632 + EX28DRAFT_3672 0.42 -1.4
339,677 - EX28DRAFT_3672 0.47 +0.0
339,860 + EX28DRAFT_3672 0.66 -0.4
339,860 + EX28DRAFT_3672 0.66 -0.5
339,860 + EX28DRAFT_3672 0.66 +0.1
339,862 + EX28DRAFT_3672 0.66 -1.1
339,863 - EX28DRAFT_3672 0.66 +0.0
339,896 + EX28DRAFT_3672 0.70 +0.8
339,897 - EX28DRAFT_3672 0.70 -0.6
339,897 - EX28DRAFT_3672 0.70 +0.9
339,897 - EX28DRAFT_3672 0.70 -0.9
339,897 - EX28DRAFT_3672 0.70 -0.6
339,934 + EX28DRAFT_3672 0.74 +3.1
339,953 + EX28DRAFT_3672 0.76 +2.0
339,979 - EX28DRAFT_3672 0.78 -0.2
339,982 - EX28DRAFT_3672 0.79 -0.3
340,086 + EX28DRAFT_3672 0.90 +1.7
340,242 - +0.4
340,339 - -0.2
340,369 - +1.6
340,405 + -1.4
340,416 + -0.8
340,483 + +2.5
340,484 - +0.3
340,486 - +0.6
340,541 + +0.2
340,541 + +0.3
340,542 - -1.3
340,622 + -0.2
340,666 + -0.1
340,667 - -2.2
340,667 - -1.1
340,667 - +2.3
340,709 + +1.8
340,731 - +0.4
340,778 + EX28DRAFT_3673 0.12 -0.7
340,779 - EX28DRAFT_3673 0.12 +0.3
340,781 + EX28DRAFT_3673 0.12 +1.0
340,834 + EX28DRAFT_3673 0.15 -0.9
340,835 - EX28DRAFT_3673 0.16 +0.1
340,835 - EX28DRAFT_3673 0.16 -1.1
341,053 - EX28DRAFT_3673 0.28 -0.4
341,086 + EX28DRAFT_3673 0.30 +1.2
341,087 - EX28DRAFT_3673 0.30 +2.9
341,119 + EX28DRAFT_3673 0.32 +0.3
341,119 + EX28DRAFT_3673 0.32 -0.9

Or see this region's nucleotide sequence