Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0744 and EX28DRAFT_0745 are separated by 130 nucleotides EX28DRAFT_0745 and EX28DRAFT_0746 are separated by 184 nucleotides EX28DRAFT_0746 and EX28DRAFT_0747 are separated by 6 nucleotides
EX28DRAFT_0744: EX28DRAFT_0744 - FOG: EAL domain, at 741,575 to 743,173
_0744
EX28DRAFT_0745: EX28DRAFT_0745 - L-serine dehydratase, iron-sulfur-dependent, single chain form, at 743,304 to 744,668
_0745
EX28DRAFT_0746: EX28DRAFT_0746 - NUDIX domain, at 744,853 to 745,431
_0746
EX28DRAFT_0747: EX28DRAFT_0747 - aminodeoxychorismate synthase, component I, bacterial clade, at 745,438 to 746,772
_0747
Position (kb) 743
744
745 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 742.366 kb on + strand, within EX28DRAFT_0744 at 742.367 kb on - strand, within EX28DRAFT_0744 at 742.467 kb on - strand, within EX28DRAFT_0744 at 742.738 kb on + strand, within EX28DRAFT_0744 at 742.744 kb on + strand, within EX28DRAFT_0744 at 742.745 kb on - strand, within EX28DRAFT_0744 at 743.068 kb on + strand at 743.082 kb on - strand at 743.143 kb on - strand at 743.222 kb on - strand at 743.302 kb on + strand at 743.305 kb on + strand at 743.306 kb on - strand at 743.322 kb on - strand at 743.384 kb on - strand at 743.384 kb on - strand at 743.387 kb on + strand at 743.388 kb on - strand at 743.388 kb on - strand at 743.445 kb on - strand, within EX28DRAFT_0745 at 743.544 kb on - strand, within EX28DRAFT_0745 at 743.693 kb on - strand, within EX28DRAFT_0745 at 743.734 kb on + strand, within EX28DRAFT_0745 at 743.735 kb on - strand, within EX28DRAFT_0745 at 743.760 kb on - strand, within EX28DRAFT_0745 at 743.771 kb on - strand, within EX28DRAFT_0745 at 743.771 kb on - strand, within EX28DRAFT_0745 at 743.934 kb on - strand, within EX28DRAFT_0745 at 744.130 kb on + strand, within EX28DRAFT_0745 at 744.238 kb on + strand, within EX28DRAFT_0745 at 744.239 kb on - strand, within EX28DRAFT_0745 at 744.242 kb on - strand, within EX28DRAFT_0745 at 744.254 kb on - strand, within EX28DRAFT_0745 at 744.274 kb on + strand, within EX28DRAFT_0745 at 744.275 kb on - strand, within EX28DRAFT_0745 at 744.432 kb on - strand, within EX28DRAFT_0745 at 744.435 kb on + strand, within EX28DRAFT_0745 at 744.450 kb on - strand, within EX28DRAFT_0745 at 744.467 kb on + strand, within EX28DRAFT_0745 at 744.471 kb on - strand, within EX28DRAFT_0745 at 744.659 kb on + strand at 744.659 kb on + strand at 744.659 kb on + strand at 744.659 kb on + strand at 744.660 kb on - strand at 744.660 kb on - strand at 744.660 kb on - strand at 744.660 kb on - strand at 744.660 kb on - strand at 744.663 kb on - strand at 744.712 kb on + strand at 744.712 kb on + strand at 744.713 kb on - strand at 744.714 kb on + strand at 744.714 kb on + strand at 744.715 kb on - strand at 744.724 kb on + strand at 744.725 kb on - strand at 744.729 kb on + strand at 744.729 kb on + strand at 744.730 kb on - strand at 744.843 kb on + strand at 744.848 kb on + strand at 744.849 kb on - strand at 744.849 kb on - strand at 744.920 kb on + strand, within EX28DRAFT_0746 at 744.921 kb on - strand, within EX28DRAFT_0746 at 745.058 kb on + strand, within EX28DRAFT_0746 at 745.077 kb on + strand, within EX28DRAFT_0746 at 745.264 kb on - strand, within EX28DRAFT_0746 at 745.268 kb on - strand, within EX28DRAFT_0746 at 745.268 kb on - strand, within EX28DRAFT_0746 at 745.378 kb on + strand at 745.378 kb on + strand at 745.470 kb on + strand at 745.488 kb on - strand at 745.611 kb on - strand, within EX28DRAFT_0747
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 742,366 + EX28DRAFT_0744 0.49 -1.6 742,367 - EX28DRAFT_0744 0.50 -1.5 742,467 - EX28DRAFT_0744 0.56 -0.9 742,738 + EX28DRAFT_0744 0.73 -2.9 742,744 + EX28DRAFT_0744 0.73 +0.4 742,745 - EX28DRAFT_0744 0.73 +1.2 743,068 + -1.1 743,082 - +3.0 743,143 - +1.2 743,222 - -2.0 743,302 + -1.1 743,305 + +0.2 743,306 - -0.2 743,322 - +1.8 743,384 - +0.3 743,384 - +0.6 743,387 + +0.3 743,388 - -0.4 743,388 - -2.5 743,445 - EX28DRAFT_0745 0.10 -3.5 743,544 - EX28DRAFT_0745 0.18 -0.3 743,693 - EX28DRAFT_0745 0.28 -0.9 743,734 + EX28DRAFT_0745 0.32 -1.8 743,735 - EX28DRAFT_0745 0.32 +1.2 743,760 - EX28DRAFT_0745 0.33 +1.7 743,771 - EX28DRAFT_0745 0.34 +2.3 743,771 - EX28DRAFT_0745 0.34 +0.2 743,934 - EX28DRAFT_0745 0.46 -0.1 744,130 + EX28DRAFT_0745 0.61 -2.1 744,238 + EX28DRAFT_0745 0.68 -0.0 744,239 - EX28DRAFT_0745 0.68 -0.1 744,242 - EX28DRAFT_0745 0.69 +3.3 744,254 - EX28DRAFT_0745 0.70 -0.5 744,274 + EX28DRAFT_0745 0.71 -0.7 744,275 - EX28DRAFT_0745 0.71 +0.2 744,432 - EX28DRAFT_0745 0.83 -1.0 744,435 + EX28DRAFT_0745 0.83 -0.8 744,450 - EX28DRAFT_0745 0.84 -1.0 744,467 + EX28DRAFT_0745 0.85 +3.3 744,471 - EX28DRAFT_0745 0.85 -0.1 744,659 + -1.2 744,659 + +0.8 744,659 + +1.2 744,659 + -0.7 744,660 - +0.3 744,660 - -0.5 744,660 - +2.8 744,660 - -0.1 744,660 - -0.3 744,663 - +0.0 744,712 + +2.2 744,712 + -0.3 744,713 - -1.1 744,714 + +0.3 744,714 + -0.9 744,715 - +0.3 744,724 + +1.0 744,725 - +1.2 744,729 + +4.2 744,729 + +0.2 744,730 - +0.7 744,843 + -0.3 744,848 + -2.2 744,849 - -0.4 744,849 - -0.2 744,920 + EX28DRAFT_0746 0.12 +0.3 744,921 - EX28DRAFT_0746 0.12 +2.3 745,058 + EX28DRAFT_0746 0.35 +0.9 745,077 + EX28DRAFT_0746 0.39 +0.2 745,264 - EX28DRAFT_0746 0.71 +0.4 745,268 - EX28DRAFT_0746 0.72 -2.1 745,268 - EX28DRAFT_0746 0.72 +1.4 745,378 + +1.8 745,378 + -0.5 745,470 + -1.0 745,488 - +1.0 745,611 - EX28DRAFT_0747 0.13 -0.4
Or see this region's nucleotide sequence