Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3410 and EX28DRAFT_3411 overlap by 4 nucleotides EX28DRAFT_3411 and EX28DRAFT_3412 are separated by 224 nucleotides EX28DRAFT_3412 and EX28DRAFT_3413 are separated by 309 nucleotides
EX28DRAFT_3410: EX28DRAFT_3410 - hypothetical protein, at 81,478 to 81,948
_3410
EX28DRAFT_3411: EX28DRAFT_3411 - hypothetical protein, at 81,945 to 82,529
_3411
EX28DRAFT_3412: EX28DRAFT_3412 - Inorganic pyrophosphatase, at 82,754 to 83,284
_3412
EX28DRAFT_3413: EX28DRAFT_3413 - ABC-type sugar transport system, periplasmic component, at 83,594 to 84,550
_3413
Position (kb) 82
83
84 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 82.095 kb on - strand, within EX28DRAFT_3411 at 82.141 kb on + strand, within EX28DRAFT_3411 at 82.214 kb on + strand, within EX28DRAFT_3411 at 82.277 kb on + strand, within EX28DRAFT_3411 at 82.439 kb on + strand, within EX28DRAFT_3411 at 82.530 kb on - strand at 82.755 kb on + strand at 83.505 kb on + strand at 83.506 kb on - strand at 83.522 kb on + strand at 83.536 kb on + strand at 83.536 kb on + strand at 83.536 kb on + strand at 83.537 kb on - strand at 83.644 kb on + strand at 83.942 kb on - strand, within EX28DRAFT_3413 at 83.957 kb on + strand, within EX28DRAFT_3413 at 83.957 kb on + strand, within EX28DRAFT_3413 at 83.957 kb on + strand, within EX28DRAFT_3413 at 83.958 kb on - strand, within EX28DRAFT_3413 at 83.958 kb on - strand, within EX28DRAFT_3413 at 83.959 kb on + strand, within EX28DRAFT_3413 at 83.959 kb on + strand, within EX28DRAFT_3413
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 82,095 - EX28DRAFT_3411 0.26 -2.8 82,141 + EX28DRAFT_3411 0.34 -0.0 82,214 + EX28DRAFT_3411 0.46 -1.4 82,277 + EX28DRAFT_3411 0.57 +1.0 82,439 + EX28DRAFT_3411 0.84 -0.8 82,530 - -0.7 82,755 + +0.3 83,505 + +0.5 83,506 - +0.7 83,522 + -0.0 83,536 + -0.5 83,536 + -0.6 83,536 + -2.0 83,537 - +0.2 83,644 + +0.1 83,942 - EX28DRAFT_3413 0.36 -0.4 83,957 + EX28DRAFT_3413 0.38 -0.6 83,957 + EX28DRAFT_3413 0.38 -0.0 83,957 + EX28DRAFT_3413 0.38 -0.6 83,958 - EX28DRAFT_3413 0.38 -0.4 83,958 - EX28DRAFT_3413 0.38 -1.3 83,959 + EX28DRAFT_3413 0.38 -1.0 83,959 + EX28DRAFT_3413 0.38 -1.3
Or see this region's nucleotide sequence