Experiment: rich media with hydrogen peroxide 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3462 and Dsui_3463 are separated by 4 nucleotides Dsui_3463 and Dsui_3464 are separated by 2 nucleotides Dsui_3464 and Dsui_3465 are separated by 143 nucleotides
Dsui_3462: Dsui_3462 - ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component, at 3,725,228 to 3,726,214
_3462
Dsui_3463: Dsui_3463 - ABC-type nitrate/sulfonate/bicarbonate transport system, permease component, at 3,726,219 to 3,727,037
_3463
Dsui_3464: Dsui_3464 - ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component, at 3,727,040 to 3,727,831
_3464
Dsui_3465: Dsui_3465 - signal transduction histidine kinase regulating C4-dicarboxylate transport system, at 3,727,975 to 3,729,807
_3465
Position (kb)
3727
3728 Strain fitness (log2 ratio)
-1
0
1 at 3726.049 kb on + strand, within Dsui_3462 at 3726.057 kb on - strand at 3726.062 kb on - strand, within Dsui_3462 at 3726.187 kb on + strand at 3726.246 kb on - strand at 3726.326 kb on + strand, within Dsui_3463 at 3726.329 kb on - strand, within Dsui_3463 at 3726.337 kb on + strand, within Dsui_3463 at 3726.454 kb on + strand, within Dsui_3463 at 3726.501 kb on - strand, within Dsui_3463 at 3726.538 kb on + strand, within Dsui_3463 at 3726.548 kb on + strand, within Dsui_3463 at 3726.556 kb on + strand, within Dsui_3463 at 3726.621 kb on + strand, within Dsui_3463 at 3726.723 kb on - strand at 3726.795 kb on + strand, within Dsui_3463 at 3726.804 kb on - strand, within Dsui_3463 at 3726.949 kb on + strand, within Dsui_3463 at 3727.026 kb on + strand at 3727.104 kb on - strand at 3727.578 kb on + strand, within Dsui_3464 at 3727.620 kb on + strand, within Dsui_3464 at 3727.632 kb on + strand, within Dsui_3464 at 3727.638 kb on + strand at 3727.665 kb on + strand, within Dsui_3464 at 3727.680 kb on - strand, within Dsui_3464 at 3727.711 kb on - strand, within Dsui_3464 at 3727.752 kb on + strand at 3727.789 kb on + strand at 3727.927 kb on - strand at 3728.253 kb on + strand, within Dsui_3465 at 3728.372 kb on + strand, within Dsui_3465 at 3728.393 kb on - strand at 3728.401 kb on - strand, within Dsui_3465 at 3728.419 kb on + strand at 3728.428 kb on + strand at 3728.546 kb on + strand, within Dsui_3465
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM remove 3,726,049 + Dsui_3462 0.83 +0.4 3,726,057 - +0.7 3,726,062 - Dsui_3462 0.84 +1.4 3,726,187 + +1.1 3,726,246 - +1.0 3,726,326 + Dsui_3463 0.13 +0.3 3,726,329 - Dsui_3463 0.13 -1.7 3,726,337 + Dsui_3463 0.14 +0.4 3,726,454 + Dsui_3463 0.29 -0.2 3,726,501 - Dsui_3463 0.34 -1.2 3,726,538 + Dsui_3463 0.39 -0.2 3,726,548 + Dsui_3463 0.40 -0.3 3,726,556 + Dsui_3463 0.41 -0.3 3,726,621 + Dsui_3463 0.49 +0.6 3,726,723 - -0.3 3,726,795 + Dsui_3463 0.70 -0.1 3,726,804 - Dsui_3463 0.71 -1.2 3,726,949 + Dsui_3463 0.89 +0.5 3,727,026 + -0.1 3,727,104 - +0.7 3,727,578 + Dsui_3464 0.68 +0.9 3,727,620 + Dsui_3464 0.73 +1.1 3,727,632 + Dsui_3464 0.75 +0.6 3,727,638 + +0.3 3,727,665 + Dsui_3464 0.79 -0.5 3,727,680 - Dsui_3464 0.81 +0.5 3,727,711 - Dsui_3464 0.85 +1.1 3,727,752 + -0.5 3,727,789 + -0.3 3,727,927 - +0.5 3,728,253 + Dsui_3465 0.15 -0.1 3,728,372 + Dsui_3465 0.22 -0.1 3,728,393 - -0.7 3,728,401 - Dsui_3465 0.23 +1.7 3,728,419 + +1.1 3,728,428 + +0.4 3,728,546 + Dsui_3465 0.31 +0.8
Or see this region's nucleotide sequence