Experiment: rich media with hydrogen peroxide 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2882 and Dsui_2883 overlap by 1 nucleotides Dsui_2883 and Dsui_2884 are separated by 166 nucleotides Dsui_2884 and Dsui_2885 are separated by 189 nucleotides
Dsui_2882: Dsui_2882 - putative hydrolase or acyltransferase of alpha/beta superfamily, at 3,078,263 to 3,079,015
_2882
Dsui_2883: Dsui_2883 - biotin biosynthesis protein BioC, at 3,079,015 to 3,079,788
_2883
Dsui_2884: Dsui_2884 - dethiobiotin synthase, at 3,079,955 to 3,080,608
_2884
Dsui_2885: Dsui_2885 - PAS domain S-box, at 3,080,798 to 3,083,941
_2885
Position (kb)
3079
3080
3081 Strain fitness (log2 ratio)
-1
0
1
2 at 3078.983 kb on + strand at 3079.040 kb on + strand at 3079.069 kb on - strand at 3079.100 kb on - strand, within Dsui_2883 at 3079.224 kb on + strand at 3079.341 kb on + strand, within Dsui_2883 at 3079.354 kb on - strand at 3079.375 kb on - strand, within Dsui_2883 at 3079.439 kb on + strand, within Dsui_2883 at 3079.548 kb on - strand at 3079.601 kb on + strand, within Dsui_2883 at 3079.754 kb on - strand at 3079.770 kb on + strand at 3079.778 kb on - strand at 3079.928 kb on - strand at 3079.953 kb on + strand at 3079.961 kb on - strand at 3079.963 kb on + strand at 3080.005 kb on - strand at 3080.046 kb on - strand, within Dsui_2884 at 3080.148 kb on + strand, within Dsui_2884 at 3080.155 kb on - strand, within Dsui_2884 at 3080.163 kb on + strand, within Dsui_2884 at 3080.355 kb on - strand at 3080.416 kb on + strand, within Dsui_2884 at 3080.602 kb on + strand at 3080.872 kb on + strand at 3080.938 kb on + strand at 3081.282 kb on - strand, within Dsui_2885 at 3081.310 kb on + strand, within Dsui_2885 at 3081.389 kb on + strand at 3081.421 kb on + strand at 3081.497 kb on + strand, within Dsui_2885
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM remove 3,078,983 + -1.5 3,079,040 + -0.1 3,079,069 - +0.6 3,079,100 - Dsui_2883 0.11 -0.1 3,079,224 + +1.6 3,079,341 + Dsui_2883 0.42 +0.4 3,079,354 - +1.1 3,079,375 - Dsui_2883 0.47 +1.1 3,079,439 + Dsui_2883 0.55 +0.2 3,079,548 - +2.6 3,079,601 + Dsui_2883 0.76 +0.8 3,079,754 - -0.4 3,079,770 + -0.3 3,079,778 - +2.2 3,079,928 - +0.6 3,079,953 + -0.0 3,079,961 - +0.1 3,079,963 + -0.7 3,080,005 - +0.6 3,080,046 - Dsui_2884 0.14 +1.2 3,080,148 + Dsui_2884 0.30 +0.7 3,080,155 - Dsui_2884 0.31 -1.7 3,080,163 + Dsui_2884 0.32 +0.1 3,080,355 - +0.1 3,080,416 + Dsui_2884 0.70 +1.1 3,080,602 + -0.5 3,080,872 + +2.6 3,080,938 + -0.4 3,081,282 - Dsui_2885 0.15 -1.5 3,081,310 + Dsui_2885 0.16 -0.0 3,081,389 + -1.2 3,081,421 + +1.1 3,081,497 + Dsui_2885 0.22 -0.9
Or see this region's nucleotide sequence