Experiment: rich media with hydrogen peroxide 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1831 and Dsui_1832 are separated by 148 nucleotides Dsui_1832 and Dsui_1833 are separated by 2 nucleotides Dsui_1833 and Dsui_1834 are separated by 187 nucleotides
Dsui_1831: Dsui_1831 - ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component, at 1,929,825 to 1,931,102
_1831
Dsui_1832: Dsui_1832 - nitrate ABC transporter, permease protein, at 1,931,251 to 1,932,141
_1832
Dsui_1833: Dsui_1833 - nitrate transport ATP-binding subunits C and D, at 1,932,144 to 1,932,944
_1833
Dsui_1834: Dsui_1834 - hypothetical protein, at 1,933,132 to 1,933,401
_1834
Position (kb)
1931
1932
1933 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1930.274 kb on + strand, within Dsui_1831 at 1930.274 kb on + strand, within Dsui_1831 at 1930.299 kb on + strand, within Dsui_1831 at 1930.304 kb on + strand at 1930.357 kb on - strand, within Dsui_1831 at 1930.405 kb on + strand at 1930.449 kb on + strand, within Dsui_1831 at 1930.497 kb on - strand, within Dsui_1831 at 1930.573 kb on - strand, within Dsui_1831 at 1930.710 kb on + strand, within Dsui_1831 at 1930.739 kb on - strand at 1930.805 kb on - strand, within Dsui_1831 at 1930.811 kb on - strand, within Dsui_1831 at 1930.905 kb on + strand, within Dsui_1831 at 1930.938 kb on - strand, within Dsui_1831 at 1930.948 kb on + strand at 1930.970 kb on - strand at 1931.031 kb on - strand at 1931.031 kb on - strand at 1931.091 kb on - strand at 1931.106 kb on - strand at 1931.144 kb on + strand at 1931.156 kb on + strand at 1931.390 kb on - strand at 1931.570 kb on + strand, within Dsui_1832 at 1931.765 kb on - strand at 1931.809 kb on - strand, within Dsui_1832 at 1931.845 kb on - strand at 1931.863 kb on + strand at 1931.889 kb on + strand, within Dsui_1832 at 1931.905 kb on + strand, within Dsui_1832 at 1932.003 kb on - strand, within Dsui_1832 at 1932.030 kb on + strand, within Dsui_1832 at 1932.079 kb on - strand at 1932.098 kb on + strand at 1932.136 kb on - strand at 1932.161 kb on + strand at 1932.169 kb on - strand at 1932.233 kb on - strand at 1932.283 kb on + strand, within Dsui_1833 at 1932.291 kb on - strand at 1932.317 kb on - strand, within Dsui_1833 at 1932.414 kb on + strand at 1932.433 kb on + strand, within Dsui_1833 at 1932.492 kb on - strand at 1932.518 kb on + strand, within Dsui_1833 at 1932.522 kb on + strand at 1932.611 kb on + strand, within Dsui_1833 at 1932.611 kb on + strand, within Dsui_1833 at 1932.619 kb on - strand at 1932.619 kb on - strand, within Dsui_1833 at 1932.631 kb on - strand, within Dsui_1833 at 1932.705 kb on + strand, within Dsui_1833 at 1932.933 kb on - strand at 1932.958 kb on - strand at 1932.986 kb on - strand at 1933.041 kb on + strand at 1933.049 kb on - strand at 1933.091 kb on - strand at 1933.109 kb on + strand at 1933.117 kb on - strand at 1933.127 kb on - strand at 1933.138 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM remove 1,930,274 + Dsui_1831 0.35 -1.3 1,930,274 + Dsui_1831 0.35 -0.5 1,930,299 + Dsui_1831 0.37 +0.1 1,930,304 + +2.3 1,930,357 - Dsui_1831 0.42 -0.3 1,930,405 + +1.7 1,930,449 + Dsui_1831 0.49 +0.9 1,930,497 - Dsui_1831 0.53 -0.6 1,930,573 - Dsui_1831 0.59 -0.4 1,930,710 + Dsui_1831 0.69 +1.1 1,930,739 - +1.7 1,930,805 - Dsui_1831 0.77 -1.4 1,930,811 - Dsui_1831 0.77 +0.4 1,930,905 + Dsui_1831 0.85 +1.1 1,930,938 - Dsui_1831 0.87 +0.9 1,930,948 + -0.3 1,930,970 - +0.7 1,931,031 - +0.7 1,931,031 - -0.6 1,931,091 - +1.7 1,931,106 - +0.3 1,931,144 + +0.7 1,931,156 + +0.4 1,931,390 - +1.7 1,931,570 + Dsui_1832 0.36 -0.1 1,931,765 - +1.7 1,931,809 - Dsui_1832 0.63 +1.1 1,931,845 - -0.6 1,931,863 + +0.1 1,931,889 + Dsui_1832 0.72 +1.0 1,931,905 + Dsui_1832 0.73 +1.1 1,932,003 - Dsui_1832 0.84 +0.3 1,932,030 + Dsui_1832 0.87 +0.4 1,932,079 - +0.1 1,932,098 + +0.2 1,932,136 - +1.4 1,932,161 + +1.7 1,932,169 - +2.3 1,932,233 - +0.7 1,932,283 + Dsui_1833 0.17 -0.4 1,932,291 - +1.7 1,932,317 - Dsui_1833 0.22 -1.3 1,932,414 + -0.3 1,932,433 + Dsui_1833 0.36 +1.1 1,932,492 - +0.7 1,932,518 + Dsui_1833 0.47 -1.7 1,932,522 + +1.7 1,932,611 + Dsui_1833 0.58 -0.3 1,932,611 + Dsui_1833 0.58 -0.6 1,932,619 - +3.3 1,932,619 - Dsui_1833 0.59 +1.1 1,932,631 - Dsui_1833 0.61 +0.6 1,932,705 + Dsui_1833 0.70 +0.3 1,932,933 - -0.0 1,932,958 - +0.7 1,932,986 - +0.9 1,933,041 + +0.1 1,933,049 - +0.3 1,933,091 - +0.4 1,933,109 + +0.1 1,933,117 - +0.2 1,933,127 - -1.4 1,933,138 - +0.3
Or see this region's nucleotide sequence