Experiment: rich media with hydrogen peroxide 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1708 and Dsui_1709 are separated by 16 nucleotides Dsui_1709 and Dsui_1710 are separated by 70 nucleotides Dsui_1710 and Dsui_1711 are separated by 72 nucleotides Dsui_1711 and Dsui_1712 overlap by 26 nucleotides
Dsui_1708: Dsui_1708 - chemotaxis protein histidine kinase-like protein, at 1,794,418 to 1,796,877
_1708
Dsui_1709: Dsui_1709 - chemotaxis signal transduction protein, at 1,796,894 to 1,797,397
_1709
Dsui_1710: Dsui_1710 - PAS domain S-box, at 1,797,468 to 1,800,335
_1710
Dsui_1711: Dsui_1711 - methylase of chemotaxis methyl-accepting protein, at 1,800,408 to 1,801,286
_1711
Dsui_1712: Dsui_1712 - chemotaxis protein, at 1,801,261 to 1,801,908
_1712
Position (kb)
1797
1798
1799
1800
1801 Strain fitness (log2 ratio)
-1
0
1
2 at 1796.538 kb on + strand, within Dsui_1708 at 1796.590 kb on - strand at 1796.643 kb on - strand at 1796.672 kb on + strand at 1796.680 kb on - strand at 1796.681 kb on + strand at 1796.710 kb on + strand at 1796.741 kb on - strand at 1796.749 kb on - strand at 1796.764 kb on + strand at 1796.809 kb on + strand at 1796.958 kb on + strand, within Dsui_1709 at 1796.966 kb on - strand, within Dsui_1709 at 1796.983 kb on - strand at 1797.125 kb on - strand, within Dsui_1709 at 1797.135 kb on - strand, within Dsui_1709 at 1797.147 kb on + strand, within Dsui_1709 at 1797.183 kb on + strand, within Dsui_1709 at 1797.233 kb on - strand at 1797.341 kb on - strand at 1797.351 kb on - strand at 1797.351 kb on - strand at 1797.394 kb on - strand at 1797.399 kb on - strand at 1797.476 kb on - strand at 1797.501 kb on - strand at 1797.557 kb on - strand at 1797.609 kb on - strand at 1797.671 kb on + strand at 1797.679 kb on - strand at 1797.698 kb on + strand at 1797.760 kb on + strand, within Dsui_1710 at 1797.797 kb on + strand, within Dsui_1710 at 1798.072 kb on - strand, within Dsui_1710 at 1798.137 kb on - strand, within Dsui_1710 at 1798.206 kb on + strand, within Dsui_1710 at 1798.229 kb on + strand, within Dsui_1710 at 1798.297 kb on - strand, within Dsui_1710 at 1798.298 kb on - strand, within Dsui_1710 at 1798.366 kb on + strand, within Dsui_1710 at 1798.374 kb on - strand, within Dsui_1710 at 1798.415 kb on + strand, within Dsui_1710 at 1798.418 kb on - strand, within Dsui_1710 at 1798.466 kb on + strand, within Dsui_1710 at 1798.620 kb on - strand, within Dsui_1710 at 1798.730 kb on + strand, within Dsui_1710 at 1798.787 kb on + strand, within Dsui_1710 at 1798.906 kb on + strand, within Dsui_1710 at 1799.055 kb on - strand, within Dsui_1710 at 1799.113 kb on + strand, within Dsui_1710 at 1799.423 kb on + strand, within Dsui_1710 at 1799.431 kb on - strand, within Dsui_1710 at 1799.431 kb on - strand, within Dsui_1710 at 1799.431 kb on - strand, within Dsui_1710 at 1799.505 kb on + strand, within Dsui_1710 at 1799.510 kb on + strand, within Dsui_1710 at 1799.526 kb on - strand, within Dsui_1710 at 1800.004 kb on + strand, within Dsui_1710 at 1800.004 kb on + strand, within Dsui_1710 at 1800.012 kb on - strand, within Dsui_1710 at 1800.296 kb on - strand at 1800.329 kb on + strand at 1800.413 kb on - strand at 1800.627 kb on - strand at 1800.724 kb on - strand at 1800.734 kb on - strand at 1800.739 kb on + strand, within Dsui_1711 at 1800.845 kb on - strand, within Dsui_1711 at 1800.959 kb on + strand, within Dsui_1711 at 1800.967 kb on - strand, within Dsui_1711 at 1800.999 kb on + strand, within Dsui_1711 at 1800.999 kb on + strand, within Dsui_1711 at 1800.999 kb on + strand, within Dsui_1711 at 1800.999 kb on + strand, within Dsui_1711 at 1801.007 kb on - strand, within Dsui_1711 at 1801.193 kb on - strand, within Dsui_1711 at 1801.267 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM remove 1,796,538 + Dsui_1708 0.86 +0.5 1,796,590 - -0.6 1,796,643 - +0.9 1,796,672 + +0.1 1,796,680 - +1.9 1,796,681 + +0.6 1,796,710 + +0.7 1,796,741 - -0.0 1,796,749 - +0.9 1,796,764 + +0.1 1,796,809 + +0.4 1,796,958 + Dsui_1709 0.13 -0.2 1,796,966 - Dsui_1709 0.14 +0.7 1,796,983 - +2.3 1,797,125 - Dsui_1709 0.46 -0.2 1,797,135 - Dsui_1709 0.48 -0.6 1,797,147 + Dsui_1709 0.50 +0.2 1,797,183 + Dsui_1709 0.57 +0.4 1,797,233 - -0.3 1,797,341 - -0.9 1,797,351 - +0.7 1,797,351 - -0.4 1,797,394 - +0.7 1,797,399 - +0.5 1,797,476 - +1.7 1,797,501 - +0.7 1,797,557 - +1.5 1,797,609 - +0.8 1,797,671 + +0.4 1,797,679 - +0.8 1,797,698 + +0.7 1,797,760 + Dsui_1710 0.10 +0.1 1,797,797 + Dsui_1710 0.11 +1.2 1,798,072 - Dsui_1710 0.21 +1.2 1,798,137 - Dsui_1710 0.23 +0.6 1,798,206 + Dsui_1710 0.26 +0.2 1,798,229 + Dsui_1710 0.27 +1.1 1,798,297 - Dsui_1710 0.29 +1.0 1,798,298 - Dsui_1710 0.29 +0.4 1,798,366 + Dsui_1710 0.31 +0.2 1,798,374 - Dsui_1710 0.32 -0.1 1,798,415 + Dsui_1710 0.33 +0.1 1,798,418 - Dsui_1710 0.33 +0.3 1,798,466 + Dsui_1710 0.35 +0.5 1,798,620 - Dsui_1710 0.40 +0.5 1,798,730 + Dsui_1710 0.44 -0.0 1,798,787 + Dsui_1710 0.46 +0.4 1,798,906 + Dsui_1710 0.50 +0.5 1,799,055 - Dsui_1710 0.55 +0.2 1,799,113 + Dsui_1710 0.57 +0.6 1,799,423 + Dsui_1710 0.68 -0.2 1,799,431 - Dsui_1710 0.68 +0.2 1,799,431 - Dsui_1710 0.68 +0.0 1,799,431 - Dsui_1710 0.68 +0.0 1,799,505 + Dsui_1710 0.71 +0.5 1,799,510 + Dsui_1710 0.71 +1.0 1,799,526 - Dsui_1710 0.72 +0.2 1,800,004 + Dsui_1710 0.88 +1.0 1,800,004 + Dsui_1710 0.88 -0.1 1,800,012 - Dsui_1710 0.89 -0.0 1,800,296 - -1.5 1,800,329 + +0.2 1,800,413 - +1.7 1,800,627 - +0.7 1,800,724 - -0.9 1,800,734 - +0.4 1,800,739 + Dsui_1711 0.38 +0.3 1,800,845 - Dsui_1711 0.50 -0.1 1,800,959 + Dsui_1711 0.63 -0.1 1,800,967 - Dsui_1711 0.64 -0.9 1,800,999 + Dsui_1711 0.67 -0.2 1,800,999 + Dsui_1711 0.67 +0.1 1,800,999 + Dsui_1711 0.67 +0.9 1,800,999 + Dsui_1711 0.67 +0.1 1,801,007 - Dsui_1711 0.68 +0.2 1,801,193 - Dsui_1711 0.89 -0.4 1,801,267 - -1.7
Or see this region's nucleotide sequence