Strain Fitness in Dechlorosoma suillum PS around Dsui_1629

Experiment: rich media with hydrogen peroxide 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1627 and Dsui_1628 are separated by 18 nucleotidesDsui_1628 and Dsui_1629 are separated by 3 nucleotidesDsui_1629 and Dsui_1630 overlap by 4 nucleotides Dsui_1627: Dsui_1627 - cytochrome c oxidase, cbb3-type, subunit I, at 1,711,019 to 1,712,446 _1627 Dsui_1628: Dsui_1628 - cytochrome c oxidase, cbb3-type, subunit II, at 1,712,465 to 1,713,085 _1628 Dsui_1629: Dsui_1629 - Cbb3-type cytochrome oxidase, subunit 3, at 1,713,089 to 1,713,277 _1629 Dsui_1630: Dsui_1630 - cytochrome c oxidase, cbb3-type, subunit III, at 1,713,274 to 1,714,173 _1630 Position (kb) 1713 1714Strain fitness (log2 ratio) -1 0 1at 1713.257 kb on + strand, within Dsui_1629at 1714.239 kb on + strandat 1714.239 kb on + strandat 1714.247 kb on - strandat 1714.268 kb on + strandat 1714.274 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM
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1,713,257 + Dsui_1629 0.89 +0.4
1,714,239 + +0.5
1,714,239 + -0.2
1,714,247 - +0.3
1,714,268 + +0.5
1,714,274 + +0.6

Or see this region's nucleotide sequence