Experiment: rich media with hydrogen peroxide 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1247 and Dsui_1248 are separated by 190 nucleotides Dsui_1248 and Dsui_1249 are separated by 71 nucleotides Dsui_1249 and Dsui_1250 overlap by 4 nucleotides
Dsui_1247: Dsui_1247 - ATPase involved in chromosome partitioning, at 1,308,509 to 1,309,603
_1247
Dsui_1248: Dsui_1248 - protein containing C-terminal region/beta chain of methionyl-tRNA synthetase, at 1,309,794 to 1,311,923
_1248
Dsui_1249: Dsui_1249 - hypothetical protein, at 1,311,995 to 1,312,267
_1249
Dsui_1250: Dsui_1250 - sulfate permease-like transporter, MFS superfamily, at 1,312,264 to 1,313,931
_1250
Position (kb)
1309
1310
1311
1312 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1309.583 kb on - strand at 1309.664 kb on - strand at 1309.664 kb on - strand at 1309.664 kb on - strand at 1311.425 kb on + strand, within Dsui_1248 at 1311.972 kb on + strand at 1311.979 kb on + strand at 1312.001 kb on - strand at 1312.020 kb on + strand at 1312.056 kb on + strand, within Dsui_1249 at 1312.135 kb on + strand, within Dsui_1249 at 1312.187 kb on - strand, within Dsui_1249 at 1312.192 kb on + strand, within Dsui_1249 at 1312.200 kb on - strand, within Dsui_1249 at 1312.224 kb on + strand, within Dsui_1249 at 1312.513 kb on + strand, within Dsui_1250 at 1312.594 kb on + strand, within Dsui_1250 at 1312.594 kb on + strand, within Dsui_1250 at 1312.602 kb on - strand, within Dsui_1250 at 1312.602 kb on - strand at 1312.612 kb on + strand, within Dsui_1250 at 1312.798 kb on - strand, within Dsui_1250 at 1312.808 kb on - strand, within Dsui_1250 at 1312.861 kb on - strand, within Dsui_1250 at 1312.865 kb on - strand, within Dsui_1250
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM remove 1,309,583 - -1.1 1,309,664 - -0.4 1,309,664 - +3.3 1,309,664 - -0.5 1,311,425 + Dsui_1248 0.77 +0.6 1,311,972 + -0.1 1,311,979 + +0.9 1,312,001 - -0.1 1,312,020 + +0.1 1,312,056 + Dsui_1249 0.22 -0.1 1,312,135 + Dsui_1249 0.51 -0.2 1,312,187 - Dsui_1249 0.70 -1.4 1,312,192 + Dsui_1249 0.72 +0.6 1,312,200 - Dsui_1249 0.75 -0.1 1,312,224 + Dsui_1249 0.84 +0.2 1,312,513 + Dsui_1250 0.15 +0.4 1,312,594 + Dsui_1250 0.20 +0.5 1,312,594 + Dsui_1250 0.20 +0.7 1,312,602 - Dsui_1250 0.20 +0.8 1,312,602 - +2.0 1,312,612 + Dsui_1250 0.21 -0.6 1,312,798 - Dsui_1250 0.32 -0.6 1,312,808 - Dsui_1250 0.33 -0.7 1,312,861 - Dsui_1250 0.36 +0.0 1,312,865 - Dsui_1250 0.36 -0.2
Or see this region's nucleotide sequence