Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0284 and Shew_0285 are separated by 28 nucleotides Shew_0285 and Shew_0286 are separated by 197 nucleotides
Shew_0284: Shew_0284 - hypothetical protein (RefSeq), at 302,166 to 303,491
_0284
Shew_0285: Shew_0285 - diguanylate cyclase (RefSeq), at 303,520 to 304,401
_0285
Shew_0286: Shew_0286 - extracellular solute-binding protein (RefSeq), at 304,599 to 305,408
_0286
Position (kb) 303
304
305 Strain fitness (log2 ratio) -1
0
1 at 302.621 kb on + strand, within Shew_0284 at 302.650 kb on - strand, within Shew_0284 at 302.698 kb on + strand, within Shew_0284 at 302.859 kb on - strand, within Shew_0284 at 303.036 kb on + strand, within Shew_0284 at 303.046 kb on + strand, within Shew_0284 at 303.046 kb on + strand, within Shew_0284 at 303.046 kb on + strand, within Shew_0284 at 303.257 kb on - strand, within Shew_0284 at 303.279 kb on + strand, within Shew_0284 at 303.388 kb on + strand at 303.542 kb on - strand at 303.561 kb on + strand at 303.584 kb on - strand at 303.584 kb on + strand at 303.784 kb on - strand, within Shew_0285 at 304.174 kb on + strand, within Shew_0285 at 304.786 kb on + strand, within Shew_0286 at 304.794 kb on - strand, within Shew_0286 at 305.014 kb on - strand, within Shew_0286 at 305.014 kb on - strand, within Shew_0286 at 305.373 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 302,621 + Shew_0284 0.34 -0.0 302,650 - Shew_0284 0.37 -0.9 302,698 + Shew_0284 0.40 +0.1 302,859 - Shew_0284 0.52 -0.5 303,036 + Shew_0284 0.66 -0.4 303,046 + Shew_0284 0.66 -0.3 303,046 + Shew_0284 0.66 -0.1 303,046 + Shew_0284 0.66 -0.7 303,257 - Shew_0284 0.82 -0.4 303,279 + Shew_0284 0.84 -0.5 303,388 + -0.4 303,542 - -0.3 303,561 + -0.4 303,584 - -0.3 303,584 + -0.4 303,784 - Shew_0285 0.30 +1.6 304,174 + Shew_0285 0.74 +0.2 304,786 + Shew_0286 0.23 +0.2 304,794 - Shew_0286 0.24 +1.1 305,014 - Shew_0286 0.51 -0.5 305,014 - Shew_0286 0.51 +0.3 305,373 + +0.3
Or see this region's nucleotide sequence