Experiment: m.b. Cobalt chloride 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2782 and Dshi_2783 are separated by 472 nucleotides Dshi_2783 and Dshi_2784 are separated by 53 nucleotides Dshi_2784 and Dshi_2785 are separated by 33 nucleotides
Dshi_2782: Dshi_2782 - PAS fold-4 domain protein (RefSeq), at 2,942,514 to 2,943,002
_2782
Dshi_2783: Dshi_2783 - N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD (RefSeq), at 2,943,475 to 2,944,113
_2783
Dshi_2784: Dshi_2784 - hypothetical protein (RefSeq), at 2,944,167 to 2,944,769
_2784
Dshi_2785: Dshi_2785 - glutamyl-tRNA(Gln) amidotransferase, A subunit (RefSeq), at 2,944,803 to 2,946,290
_2785
Position (kb)
2943
2944
2945 Strain fitness (log2 ratio)
-2
-1
0
1 at 2942.753 kb on + strand, within Dshi_2782 at 2943.566 kb on - strand, within Dshi_2783 at 2943.577 kb on - strand, within Dshi_2783 at 2943.627 kb on + strand, within Dshi_2783 at 2943.881 kb on - strand, within Dshi_2783 at 2944.022 kb on + strand, within Dshi_2783 at 2944.077 kb on + strand at 2944.118 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.5 mM remove 2,942,753 + Dshi_2782 0.49 +1.2 2,943,566 - Dshi_2783 0.14 -1.6 2,943,577 - Dshi_2783 0.16 -1.1 2,943,627 + Dshi_2783 0.24 -2.5 2,943,881 - Dshi_2783 0.64 +0.5 2,944,022 + Dshi_2783 0.86 -2.7 2,944,077 + -1.7 2,944,118 - +0.5
Or see this region's nucleotide sequence