Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1773

Experiment: m.b. Cobalt chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1771 and Dshi_1772 overlap by 4 nucleotidesDshi_1772 and Dshi_1773 are separated by 195 nucleotidesDshi_1773 and Dshi_1774 are separated by 39 nucleotidesDshi_1774 and Dshi_1775 are separated by 67 nucleotides Dshi_1771: Dshi_1771 - hypothetical protein (RefSeq), at 1,838,034 to 1,839,236 _1771 Dshi_1772: Dshi_1772 - hypothetical protein (RefSeq), at 1,839,233 to 1,839,772 _1772 Dshi_1773: Dshi_1773 - peptidase M48 Ste24p (RefSeq), at 1,839,968 to 1,840,660 _1773 Dshi_1774: Dshi_1774 - hypothetical protein (RefSeq), at 1,840,700 to 1,840,987 _1774 Dshi_1775: Dshi_1775 - (Glutamate--ammonia-ligase) adenylyltransferase (RefSeq), at 1,841,055 to 1,843,865 _1775 Position (kb) 1839 1840 1841Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1838.983 kb on - strand, within Dshi_1771at 1839.336 kb on - strand, within Dshi_1772at 1839.477 kb on + strand, within Dshi_1772at 1839.485 kb on - strand, within Dshi_1772at 1839.485 kb on - strand, within Dshi_1772at 1839.487 kb on + strand, within Dshi_1772at 1839.861 kb on + strandat 1840.034 kb on - strandat 1840.263 kb on + strand, within Dshi_1773at 1840.493 kb on - strand, within Dshi_1773at 1840.620 kb on + strandat 1840.652 kb on - strandat 1840.718 kb on - strandat 1841.243 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.5 mM
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1,838,983 - Dshi_1771 0.79 -0.8
1,839,336 - Dshi_1772 0.19 +0.2
1,839,477 + Dshi_1772 0.45 +0.4
1,839,485 - Dshi_1772 0.47 +0.2
1,839,485 - Dshi_1772 0.47 -2.8
1,839,487 + Dshi_1772 0.47 -0.8
1,839,861 + -2.0
1,840,034 - -1.5
1,840,263 + Dshi_1773 0.43 -1.7
1,840,493 - Dshi_1773 0.76 +0.2
1,840,620 + -2.0
1,840,652 - +2.5
1,840,718 - -1.0
1,841,243 - +0.2

Or see this region's nucleotide sequence