Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1410

Experiment: m.b. Cobalt chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1409 and Dshi_1410 are separated by 12 nucleotidesDshi_1410 and Dshi_1411 are separated by 73 nucleotidesDshi_1411 and Dshi_1412 are separated by 38 nucleotides Dshi_1409: Dshi_1409 - hypothetical protein (RefSeq), at 1,463,926 to 1,464,975 _1409 Dshi_1410: Dshi_1410 - protein of unknown function DUF442 (RefSeq), at 1,464,988 to 1,465,500 _1410 Dshi_1411: Dshi_1411 - transcriptional regulator, TraR/DksA family (RefSeq), at 1,465,574 to 1,465,852 _1411 Dshi_1412: Dshi_1412 - hypothetical protein (RefSeq), at 1,465,891 to 1,466,133 _1412 Position (kb) 1464 1465 1466Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1464.522 kb on - strand, within Dshi_1409at 1464.561 kb on + strand, within Dshi_1409at 1464.652 kb on + strand, within Dshi_1409at 1464.735 kb on + strand, within Dshi_1409at 1464.967 kb on + strandat 1465.189 kb on - strand, within Dshi_1410at 1465.429 kb on - strand, within Dshi_1410at 1465.500 kb on + strandat 1465.524 kb on - strandat 1465.656 kb on - strand, within Dshi_1411at 1465.698 kb on + strand, within Dshi_1411at 1465.717 kb on + strand, within Dshi_1411at 1465.769 kb on + strand, within Dshi_1411at 1465.841 kb on + strandat 1465.847 kb on + strandat 1465.855 kb on - strandat 1466.016 kb on + strand, within Dshi_1412at 1466.135 kb on - strandat 1466.281 kb on - strandat 1466.360 kb on - strandat 1466.395 kb on + strandat 1466.470 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.5 mM
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1,464,522 - Dshi_1409 0.57 +0.6
1,464,561 + Dshi_1409 0.60 +0.3
1,464,652 + Dshi_1409 0.69 +1.3
1,464,735 + Dshi_1409 0.77 -1.6
1,464,967 + -2.3
1,465,189 - Dshi_1410 0.39 -2.7
1,465,429 - Dshi_1410 0.86 -2.7
1,465,500 + -0.4
1,465,524 - +2.6
1,465,656 - Dshi_1411 0.29 -0.9
1,465,698 + Dshi_1411 0.44 +1.9
1,465,717 + Dshi_1411 0.51 -1.3
1,465,769 + Dshi_1411 0.70 -0.9
1,465,841 + +0.2
1,465,847 + +1.3
1,465,855 - +1.9
1,466,016 + Dshi_1412 0.51 +0.6
1,466,135 - +0.3
1,466,281 - +1.6
1,466,360 - -0.3
1,466,395 + -3.6
1,466,470 + +0.3

Or see this region's nucleotide sequence