Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1337

Experiment: m.b. Cobalt chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1336 and Dshi_1337 are separated by 113 nucleotidesDshi_1337 and Dshi_1338 are separated by 67 nucleotides Dshi_1336: Dshi_1336 - peptide chain release factor 3 (RefSeq), at 1,389,301 to 1,390,908 _1336 Dshi_1337: Dshi_1337 - hypothetical protein (RefSeq), at 1,391,022 to 1,391,393 _1337 Dshi_1338: Dshi_1338 - UspA domain protein (RefSeq), at 1,391,461 to 1,392,303 _1338 Position (kb) 1391 1392Strain fitness (log2 ratio) -2 -1 0 1 2at 1390.196 kb on + strand, within Dshi_1336at 1390.349 kb on - strand, within Dshi_1336at 1390.349 kb on - strand, within Dshi_1336at 1390.638 kb on - strand, within Dshi_1336at 1390.759 kb on - strandat 1390.879 kb on + strandat 1390.887 kb on + strandat 1390.900 kb on + strandat 1390.922 kb on - strandat 1390.922 kb on - strandat 1391.096 kb on + strand, within Dshi_1337at 1391.320 kb on + strand, within Dshi_1337at 1391.381 kb on - strandat 1391.488 kb on - strandat 1391.556 kb on - strand, within Dshi_1338at 1391.565 kb on + strand, within Dshi_1338at 1391.671 kb on - strand, within Dshi_1338at 1391.706 kb on - strand, within Dshi_1338at 1391.732 kb on + strand, within Dshi_1338at 1391.785 kb on + strand, within Dshi_1338at 1391.796 kb on - strand, within Dshi_1338at 1391.826 kb on + strand, within Dshi_1338at 1392.100 kb on + strand, within Dshi_1338at 1392.108 kb on - strand, within Dshi_1338at 1392.259 kb on + strandat 1392.335 kb on + strandat 1392.343 kb on - strandat 1392.381 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.5 mM
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1,390,196 + Dshi_1336 0.56 -0.3
1,390,349 - Dshi_1336 0.65 -0.7
1,390,349 - Dshi_1336 0.65 +1.3
1,390,638 - Dshi_1336 0.83 -0.4
1,390,759 - -0.3
1,390,879 + -2.0
1,390,887 + +2.3
1,390,900 + -2.5
1,390,922 - +0.8
1,390,922 - -0.0
1,391,096 + Dshi_1337 0.20 +1.9
1,391,320 + Dshi_1337 0.80 -2.7
1,391,381 - -1.4
1,391,488 - -0.8
1,391,556 - Dshi_1338 0.11 +0.3
1,391,565 + Dshi_1338 0.12 +1.1
1,391,671 - Dshi_1338 0.25 -0.4
1,391,706 - Dshi_1338 0.29 -0.1
1,391,732 + Dshi_1338 0.32 -1.5
1,391,785 + Dshi_1338 0.38 -0.1
1,391,796 - Dshi_1338 0.40 +0.3
1,391,826 + Dshi_1338 0.43 -1.7
1,392,100 + Dshi_1338 0.76 -2.2
1,392,108 - Dshi_1338 0.77 -0.8
1,392,259 + +0.3
1,392,335 + -0.7
1,392,343 - +0.3
1,392,381 + -1.0

Or see this region's nucleotide sequence