Experiment: m.b. Cobalt chloride 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1336 and Dshi_1337 are separated by 113 nucleotides Dshi_1337 and Dshi_1338 are separated by 67 nucleotides
Dshi_1336: Dshi_1336 - peptide chain release factor 3 (RefSeq), at 1,389,301 to 1,390,908
_1336
Dshi_1337: Dshi_1337 - hypothetical protein (RefSeq), at 1,391,022 to 1,391,393
_1337
Dshi_1338: Dshi_1338 - UspA domain protein (RefSeq), at 1,391,461 to 1,392,303
_1338
Position (kb)
1391
1392 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1390.196 kb on + strand, within Dshi_1336 at 1390.349 kb on - strand, within Dshi_1336 at 1390.349 kb on - strand, within Dshi_1336 at 1390.638 kb on - strand, within Dshi_1336 at 1390.759 kb on - strand at 1390.879 kb on + strand at 1390.887 kb on + strand at 1390.900 kb on + strand at 1390.922 kb on - strand at 1390.922 kb on - strand at 1391.096 kb on + strand, within Dshi_1337 at 1391.320 kb on + strand, within Dshi_1337 at 1391.381 kb on - strand at 1391.488 kb on - strand at 1391.556 kb on - strand, within Dshi_1338 at 1391.565 kb on + strand, within Dshi_1338 at 1391.671 kb on - strand, within Dshi_1338 at 1391.706 kb on - strand, within Dshi_1338 at 1391.732 kb on + strand, within Dshi_1338 at 1391.785 kb on + strand, within Dshi_1338 at 1391.796 kb on - strand, within Dshi_1338 at 1391.826 kb on + strand, within Dshi_1338 at 1392.100 kb on + strand, within Dshi_1338 at 1392.108 kb on - strand, within Dshi_1338 at 1392.259 kb on + strand at 1392.335 kb on + strand at 1392.343 kb on - strand at 1392.381 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.5 mM remove 1,390,196 + Dshi_1336 0.56 -0.3 1,390,349 - Dshi_1336 0.65 -0.7 1,390,349 - Dshi_1336 0.65 +1.3 1,390,638 - Dshi_1336 0.83 -0.4 1,390,759 - -0.3 1,390,879 + -2.0 1,390,887 + +2.3 1,390,900 + -2.5 1,390,922 - +0.8 1,390,922 - -0.0 1,391,096 + Dshi_1337 0.20 +1.9 1,391,320 + Dshi_1337 0.80 -2.7 1,391,381 - -1.4 1,391,488 - -0.8 1,391,556 - Dshi_1338 0.11 +0.3 1,391,565 + Dshi_1338 0.12 +1.1 1,391,671 - Dshi_1338 0.25 -0.4 1,391,706 - Dshi_1338 0.29 -0.1 1,391,732 + Dshi_1338 0.32 -1.5 1,391,785 + Dshi_1338 0.38 -0.1 1,391,796 - Dshi_1338 0.40 +0.3 1,391,826 + Dshi_1338 0.43 -1.7 1,392,100 + Dshi_1338 0.76 -2.2 1,392,108 - Dshi_1338 0.77 -0.8 1,392,259 + +0.3 1,392,335 + -0.7 1,392,343 - +0.3 1,392,381 + -1.0
Or see this region's nucleotide sequence