Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0365

Experiment: m.b. Cobalt chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0364 and Dshi_0365 are separated by 25 nucleotidesDshi_0365 and Dshi_0366 are separated by 6 nucleotidesDshi_0366 and Dshi_0367 are separated by 207 nucleotides Dshi_0364: Dshi_0364 - protein of unknown function DUF195 (RefSeq), at 347,936 to 349,168 _0364 Dshi_0365: Dshi_0365 - anti-ECFsigma factor, ChrR (RefSeq), at 349,194 to 349,865 _0365 Dshi_0366: Dshi_0366 - RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq), at 349,872 to 350,441 _0366 Dshi_0367: Dshi_0367 - amine oxidase (RefSeq), at 350,649 to 351,953 _0367 Position (kb) 349 350Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 348.234 kb on - strand, within Dshi_0364at 348.322 kb on - strand, within Dshi_0364at 348.392 kb on - strand, within Dshi_0364at 348.394 kb on + strand, within Dshi_0364at 348.403 kb on - strand, within Dshi_0364at 348.747 kb on - strand, within Dshi_0364at 348.856 kb on + strand, within Dshi_0364at 348.864 kb on - strand, within Dshi_0364at 348.884 kb on - strand, within Dshi_0364at 348.940 kb on + strand, within Dshi_0364at 349.123 kb on + strandat 349.190 kb on + strandat 349.281 kb on - strand, within Dshi_0365at 349.281 kb on - strand, within Dshi_0365at 349.912 kb on - strandat 349.946 kb on - strand, within Dshi_0366at 350.079 kb on + strand, within Dshi_0366at 350.082 kb on - strand, within Dshi_0366at 350.305 kb on + strand, within Dshi_0366at 350.313 kb on - strand, within Dshi_0366at 350.313 kb on - strand, within Dshi_0366at 350.376 kb on - strand, within Dshi_0366at 350.391 kb on - strandat 350.446 kb on + strandat 350.492 kb on + strandat 350.532 kb on + strandat 350.555 kb on - strandat 350.561 kb on - strandat 350.575 kb on + strandat 350.607 kb on - strandat 350.617 kb on - strandat 350.627 kb on - strandat 350.629 kb on + strandat 350.637 kb on - strandat 350.637 kb on - strandat 350.644 kb on + strandat 350.676 kb on - strandat 350.721 kb on - strandat 350.823 kb on - strand, within Dshi_0367

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.5 mM
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348,234 - Dshi_0364 0.24 -1.3
348,322 - Dshi_0364 0.31 +0.3
348,392 - Dshi_0364 0.37 +0.3
348,394 + Dshi_0364 0.37 -1.9
348,403 - Dshi_0364 0.38 -0.3
348,747 - Dshi_0364 0.66 +3.3
348,856 + Dshi_0364 0.75 -1.3
348,864 - Dshi_0364 0.75 +1.6
348,884 - Dshi_0364 0.77 +0.3
348,940 + Dshi_0364 0.81 +0.1
349,123 + +0.4
349,190 + -1.7
349,281 - Dshi_0365 0.13 -2.4
349,281 - Dshi_0365 0.13 +0.3
349,912 - +1.3
349,946 - Dshi_0366 0.13 +0.3
350,079 + Dshi_0366 0.36 +0.5
350,082 - Dshi_0366 0.37 +0.1
350,305 + Dshi_0366 0.76 +1.0
350,313 - Dshi_0366 0.77 +1.3
350,313 - Dshi_0366 0.77 -0.1
350,376 - Dshi_0366 0.88 +0.2
350,391 - -0.3
350,446 + -0.6
350,492 + -1.0
350,532 + +0.9
350,555 - +0.1
350,561 - +0.7
350,575 + -2.2
350,607 - -2.0
350,617 - +1.3
350,627 - -1.4
350,629 + -0.1
350,637 - -0.4
350,637 - -0.7
350,644 + -1.2
350,676 - +1.3
350,721 - -2.9
350,823 - Dshi_0367 0.13 -0.0

Or see this region's nucleotide sequence