Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1924 and Shewana3_1925 are separated by 131 nucleotides Shewana3_1925 and Shewana3_1926 are separated by 741 nucleotides
Shewana3_1924: Shewana3_1924 - glucan 1,4-alpha-glucosidase (RefSeq), at 2,287,223 to 2,289,736
_1924
Shewana3_1925: Shewana3_1925 - major facilitator transporter (RefSeq), at 2,289,868 to 2,291,463
_1925
Shewana3_1926: Shewana3_1926 - YCII-related (RefSeq), at 2,292,205 to 2,292,483
_1926
Position (kb)
2289
2290
2291
2292 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 2289.297 kb on + strand, within Shewana3_1924 at 2289.468 kb on + strand, within Shewana3_1924 at 2289.874 kb on - strand at 2289.895 kb on - strand at 2289.962 kb on - strand at 2290.028 kb on - strand, within Shewana3_1925 at 2290.132 kb on - strand, within Shewana3_1925 at 2290.306 kb on + strand, within Shewana3_1925 at 2290.346 kb on + strand, within Shewana3_1925 at 2290.653 kb on - strand, within Shewana3_1925 at 2290.888 kb on + strand, within Shewana3_1925 at 2291.499 kb on - strand at 2291.713 kb on + strand at 2291.742 kb on + strand at 2291.752 kb on + strand at 2291.760 kb on - strand at 2291.873 kb on + strand at 2291.910 kb on + strand at 2291.911 kb on + strand at 2291.918 kb on - strand at 2291.918 kb on - strand at 2292.109 kb on + strand at 2292.127 kb on - strand at 2292.190 kb on + strand at 2292.253 kb on - strand, within Shewana3_1926
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose (C) remove 2,289,297 + Shewana3_1924 0.82 -0.5 2,289,468 + Shewana3_1924 0.89 -2.0 2,289,874 - -1.5 2,289,895 - -2.9 2,289,962 - -6.0 2,290,028 - Shewana3_1925 0.10 -4.3 2,290,132 - Shewana3_1925 0.17 -4.2 2,290,306 + Shewana3_1925 0.27 -4.8 2,290,346 + Shewana3_1925 0.30 -5.1 2,290,653 - Shewana3_1925 0.49 -5.2 2,290,888 + Shewana3_1925 0.64 -2.2 2,291,499 - -6.0 2,291,713 + -3.0 2,291,742 + -5.6 2,291,752 + -4.4 2,291,760 - -5.5 2,291,873 + +0.9 2,291,910 + -1.4 2,291,911 + -1.5 2,291,918 - +0.3 2,291,918 - +0.6 2,292,109 + +0.3 2,292,127 - -1.0 2,292,190 + -1.3 2,292,253 - Shewana3_1926 0.17 -0.0
Or see this region's nucleotide sequence