Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0662 and Shew_0663 are separated by 6 nucleotides Shew_0663 and Shew_0664 overlap by 1 nucleotides Shew_0664 and Shew_0665 are separated by 331 nucleotides
Shew_0662: Shew_0662 - NAD(P) transhydrogenase, beta subunit (RefSeq), at 752,204 to 753,586
_0662
Shew_0663: Shew_0663 - oxidoreductase (RefSeq), at 753,593 to 753,868
_0663
Shew_0664: Shew_0664 - NAD(P) transhydrogenase subunit alpha (RefSeq), at 753,868 to 755,037
_0664
Shew_0665: Shew_0665 - sulfite reductase (NADPH) flavoprotein, alpha chain (RefSeq), at 755,369 to 757,153
_0665
Position (kb) 753
754
755
756 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1 at 752.882 kb on + strand, within Shew_0662 at 753.631 kb on + strand, within Shew_0663 at 753.737 kb on - strand, within Shew_0663 at 753.853 kb on - strand at 754.355 kb on + strand, within Shew_0664 at 754.430 kb on - strand, within Shew_0664 at 754.471 kb on - strand, within Shew_0664 at 754.499 kb on - strand, within Shew_0664 at 754.795 kb on - strand, within Shew_0664 at 754.811 kb on + strand, within Shew_0664 at 754.811 kb on + strand, within Shew_0664 at 754.819 kb on - strand, within Shew_0664 at 755.052 kb on + strand at 755.147 kb on - strand at 755.351 kb on + strand at 755.397 kb on + strand at 755.397 kb on + strand at 755.442 kb on + strand at 755.450 kb on - strand at 755.457 kb on - strand at 755.504 kb on - strand at 755.504 kb on - strand at 755.712 kb on - strand, within Shew_0665 at 755.872 kb on + strand, within Shew_0665 at 755.963 kb on - strand, within Shew_0665 at 755.965 kb on + strand, within Shew_0665
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 752,882 + Shew_0662 0.49 +0.5 753,631 + Shew_0663 0.14 +0.7 753,737 - Shew_0663 0.52 +1.2 753,853 - +0.7 754,355 + Shew_0664 0.42 -1.0 754,430 - Shew_0664 0.48 -0.1 754,471 - Shew_0664 0.52 -1.6 754,499 - Shew_0664 0.54 -0.8 754,795 - Shew_0664 0.79 +0.7 754,811 + Shew_0664 0.81 -0.4 754,811 + Shew_0664 0.81 -0.6 754,819 - Shew_0664 0.81 -3.6 755,052 + +0.7 755,147 - -0.1 755,351 + -5.6 755,397 + -4.4 755,397 + -3.2 755,442 + -2.0 755,450 - -3.7 755,457 - -1.8 755,504 - -3.0 755,504 - -7.2 755,712 - Shew_0665 0.19 -4.3 755,872 + Shew_0665 0.28 -6.7 755,963 - Shew_0665 0.33 -3.9 755,965 + Shew_0665 0.33 -5.5
Or see this region's nucleotide sequence