Experiment: D-Glucosamine Hydrochloride as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_723 and HP15_724 are separated by 116 nucleotides HP15_724 and HP15_725 overlap by 4 nucleotides
HP15_723: HP15_723 - TRAP transporter for fumarate, succinate, L-malate, and 2-oxoglutarate, fused 4TM/12TM components <small>(from data)</small>, at 731,411 to 733,600
_723
HP15_724: HP15_724 - periplasmic sensor signal transduction histidine kinase, at 733,717 to 735,531
_724
HP15_725: HP15_725 - two component, sigma54 specific, transcriptional regulator, Fis family, at 735,528 to 736,880
_725
Position (kb) 733
734
735
736 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 732.861 kb on + strand, within HP15_723 at 732.923 kb on + strand, within HP15_723 at 732.990 kb on + strand, within HP15_723 at 732.998 kb on - strand, within HP15_723 at 733.064 kb on + strand, within HP15_723 at 733.077 kb on - strand, within HP15_723 at 733.136 kb on - strand, within HP15_723 at 733.318 kb on - strand, within HP15_723 at 733.379 kb on - strand, within HP15_723 at 733.397 kb on - strand at 733.460 kb on - strand at 733.492 kb on + strand at 733.514 kb on + strand at 733.546 kb on - strand at 733.713 kb on + strand at 733.766 kb on - strand at 733.817 kb on + strand at 733.817 kb on + strand at 733.820 kb on - strand at 733.825 kb on - strand at 733.987 kb on + strand, within HP15_724 at 733.995 kb on - strand, within HP15_724 at 734.228 kb on + strand, within HP15_724 at 734.500 kb on - strand, within HP15_724 at 734.502 kb on - strand, within HP15_724 at 734.512 kb on - strand, within HP15_724 at 734.563 kb on + strand, within HP15_724 at 734.579 kb on + strand, within HP15_724 at 734.647 kb on + strand, within HP15_724 at 734.657 kb on + strand, within HP15_724 at 734.657 kb on + strand, within HP15_724 at 734.657 kb on + strand, within HP15_724 at 734.695 kb on - strand, within HP15_724 at 734.754 kb on - strand, within HP15_724 at 734.975 kb on + strand, within HP15_724 at 735.081 kb on - strand, within HP15_724 at 735.169 kb on - strand, within HP15_724 at 735.210 kb on + strand, within HP15_724 at 735.218 kb on - strand, within HP15_724 at 735.404 kb on + strand at 735.412 kb on - strand at 735.470 kb on + strand at 735.480 kb on + strand at 735.511 kb on - strand at 735.584 kb on + strand at 735.757 kb on - strand, within HP15_725 at 735.757 kb on - strand, within HP15_725 at 735.787 kb on - strand, within HP15_725 at 736.103 kb on - strand, within HP15_725 at 736.256 kb on + strand, within HP15_725 at 736.282 kb on - strand, within HP15_725 at 736.283 kb on - strand, within HP15_725 at 736.490 kb on + strand, within HP15_725
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride as (N) remove 732,861 + HP15_723 0.66 -2.1 732,923 + HP15_723 0.69 -4.0 732,990 + HP15_723 0.72 +1.3 732,998 - HP15_723 0.72 -3.5 733,064 + HP15_723 0.75 -1.2 733,077 - HP15_723 0.76 -4.1 733,136 - HP15_723 0.79 -2.6 733,318 - HP15_723 0.87 -3.4 733,379 - HP15_723 0.90 -3.5 733,397 - -0.7 733,460 - -2.7 733,492 + -2.4 733,514 + -3.5 733,546 - -2.4 733,713 + -1.6 733,766 - -4.0 733,817 + -2.4 733,817 + -3.3 733,820 - -1.5 733,825 - -2.2 733,987 + HP15_724 0.15 -3.3 733,995 - HP15_724 0.15 -3.0 734,228 + HP15_724 0.28 -3.8 734,500 - HP15_724 0.43 -4.3 734,502 - HP15_724 0.43 -2.1 734,512 - HP15_724 0.44 -1.2 734,563 + HP15_724 0.47 -2.7 734,579 + HP15_724 0.47 -1.3 734,647 + HP15_724 0.51 -3.7 734,657 + HP15_724 0.52 -3.5 734,657 + HP15_724 0.52 -3.4 734,657 + HP15_724 0.52 -2.7 734,695 - HP15_724 0.54 -1.7 734,754 - HP15_724 0.57 -0.7 734,975 + HP15_724 0.69 -3.1 735,081 - HP15_724 0.75 -2.6 735,169 - HP15_724 0.80 -1.7 735,210 + HP15_724 0.82 -2.4 735,218 - HP15_724 0.83 -2.3 735,404 + -1.2 735,412 - -2.1 735,470 + -2.7 735,480 + -3.4 735,511 - -2.2 735,584 + -4.5 735,757 - HP15_725 0.17 -2.5 735,757 - HP15_725 0.17 -4.0 735,787 - HP15_725 0.19 -1.8 736,103 - HP15_725 0.42 -1.9 736,256 + HP15_725 0.54 -3.4 736,282 - HP15_725 0.56 -3.1 736,283 - HP15_725 0.56 -2.3 736,490 + HP15_725 0.71 -1.5
Or see this region's nucleotide sequence